| S.No | miRNAid | INGC | Start Pos | End Pos | Sequence(5'-3') | GC% | miRNA Length | *MFE | *MFEI | miRNA's target gene | miRNA's Target Function | type of SSR |
|---|
| 1 | ahy-mir-2704 | CM025918.1 | 1886225 | 1886038 | TAAAAGGGTCAATTTCGCTTTT | 30.44 | 23 | -42.2 | 0.66 | AH015195-RA | NAD(P)-binding Rossmann-fold superfamily protein | NA |
| 2 | ahy-mir7694-3p | CM025918.1 | 17223629 | 17223808 | TCGGCTACGAATATGTCCATTT | 39.14 | 23 | -45.5 | 0.653 | AH001670-RA | translocon at inner membrane of chloroplasts 21 | NA |
| 3 | ahy-mir-76-5p | CM025918.1 | 1058629 | 1058493 | AACCTCCAGTTCAACCAATAAC | 39.14 | 23 | -54.6 | 0.646 | AH004796-RA | 0 | NA |
| 4 | ahy-mir3441-5p.1 | CM025918.1 | 5138351 | 5138537 | ATGGCTAGAAATCCTTCAAAGT | 34.79 | 23 | -43 | 0.644 | AH005202-RA | 0 | NA |
| 5 | ahy-mir-11965-3-5p | CM025918.1 | 11850460 | 11850664 | AAGCAGGAATTTGGCGGTAGTT | 43.48 | 23 | -60.8 | 0.641 | AH012476-RA | PAP/OAS1 substrate-binding domain superfamily | NA |
| 6 | ahy-mir160b-3p | CM025918.1 | 15962432 | 15962550 | GCCATTGATCCAAGCATTCTCT | 43.48 | 23 | -59.9 | 0.638 | AH005961-RA | RING/FYVE/PHD zinc finger superfamily protein | NA |
| 7 | ahy-mir9659-3p | CM025918.1 | 1666434 | 1666215 | AAGGTTGTTCACACATAAACCT | 34.79 | 23 | -47.6 | 0.637 | AH012916-RA | 0 | NA |
| 8 | ahy-mir070 | CM025918.1 | 9797401 | 9797306 | TTTGTAGTAGACATACTGCATT | 30.44 | 23 | -41.5 | 0.634 | AH005636-RA | PQ-loop repeat family protein / transmembrane family protein | NA |
| 9 | ahy-mir-7880v-5p | CM025918.1 | 11627685 | 11627893 | CACTTTTATTCGCAATAATGTC | 30.44 | 23 | -41.5 | 0.634 | AH023810-RA | Lung seven transmembrane receptor family protein | NA |
| 10 | ahy-mir-2284d | CM025918.1 | 14048900 | 14049031 | TCTTGTTGGAATTTGTTCAGGA | 34.79 | 23 | -47.3 | 0.633 | AH019358-RA | eukaryotic translation initiation factor 4G | NA |
| 11 | ahy-mir-87a-3p | CM025918.1 | 825086 | 824872 | AACGACAAGCTCTTGCTCAGGT | 47.83 | 23 | -56.2 | 0.628 | AH004773-RA | UB-like protease 1D | NA |
| 12 | ahy-mir075 | CM025918.1 | 5248659 | 5248476 | AACGAAGGTATAGATTGATGGC | 39.14 | 23 | -53.2 | 0.624 | AH005210-RA | MAC/Perforin domain-containing protein | NA |
| 13 | ahy-mir6220-3p | CM025918.1 | 18447911 | 18448069 | TTTGATCATATCCATCCCAAAC | 34.79 | 23 | -47.2 | 0.622 | AH003719-RA | 0 | NA |
| 14 | ahy-mir-9403-3p | CM025918.1 | 23123647 | 23123432 | ACACGGGGTTCTCTCTTATAAC | 43.48 | 23 | -50.3 | 0.619 | AH006170-RA | zinc finger protein 7 | NA |
| 15 | ahy-mir082 | CM025918.1 | 5978280 | 5978392 | TTTGCCTTCCGCAAAAAGGCTG | 47.83 | 23 | -50.7 | 0.616 | AH005274-RA | cullin-associated and neddylation dissociated | NA |
| 16 | ahy-mir-932-3p | CM025918.1 | 4072770 | 4072574 | ACCTTGCAAGCATTCTGGGCAT | 47.83 | 23 | -63.2 | 0.612 | AH018984-RA | translocon at the inner envelope membrane of chloroplasts 55-II | NA |
| 17 | ahy-mir-2i-3p | CM025918.1 | 4779937 | 4780151 | ATCCGCATCACAGTAAGCTTGA | 43.48 | 23 | -53.3 | 0.604 | AH010317-RA | SWIM zinc finger family protein | NA |
| 18 | ahy-mir-10821 | CM025918.1 | 14162062 | 14162248 | TTTGATCACCCTTTTTGTTTCA | 30.44 | 23 | -39.5 | 0.604 | AH023432-RA | aminophospholipid ATPase 2 | NA |
| 19 | ahy-mir-1352 | CM025918.1 | 4609723 | 4609623 | ATTGTTGTTTCTGTGACATTTG | 30.44 | 23 | -36.7 | 0.603 | AH020238-RA | GA requiring 3 | NA |
| 20 | ahy-mir11892 | CM025918.1 | 3162329 | 3162110 | TGTTGTTGAGGTTGAGATGATG | 39.14 | 23 | -51.3 | 0.601 | AH005019-RA | 0 | NA |
| 21 | ahy-mir-153-5p | CM025919.1 | 1293399 | 1293292 | TTTTTGTGATGGATTGAGCATT | 30.44 | 23 | -45 | 1.232 | AH006626-RA | Biotin/lipoate A/B protein ligase family | NA |
| 22 | ahy-mir002 | CM025919.1 | 2334607 | 2334388 | AATGAACAATCGTATGAACGGC | 39.14 | 23 | -56.6 | 1.13 | AH006717-RA | Patatin-like phospholipase family protein | NA |
| 23 | ahy-mir-1267 | CM025919.1 | 2529070 | 2528944 | TAGGATGATTACACTTCAAATG | 30.44 | 23 | -59 | 1.077 | AH002045-RA | 0 | NA |
| 24 | ahy-mir4349-3p | CM025919.1 | 15746394 | 15746568 | GAGTATATAACGTATCCTGATG | 34.79 | 23 | -71.5 | 0.956 | AH008075-RA | exostosin family protein | NA |
| 25 | ahy-mir094 | CM025919.1 | 23614898 | 23615066 | TTAGACATCTCCCGGTTTAGCA | 43.48 | 23 | -62 | 0.938 | #N/A | NA | NA |
| 26 | ahy-mir5035-5p | CM025919.1 | 8116077 | 8115915 | TCTAGCCATTTTTTCCTTTAAC | 30.44 | 23 | -58.8 | 0.899 | AH004345-RA | Galactosyl transferase GMA12/MNN10 family protein | NA |
| 27 | ahy-mir-7416-3p | CM025919.1 | 23552515 | 23552729 | TAATGTTCTGTCTGGGATTTAA | 30.44 | 23 | -48.6 | 0.892 | AH021407-RA | 0 | NA |
| 28 | ahy-mir-10318 | CM025919.1 | 23881624 | 23881757 | AAAGCATTTGCCTGATCTTTTT | 30.44 | 23 | -57.6 | 0.868 | AH019614-RA | DEA(D/H)-box RNA helicase family protein | NA |
| 29 | ahy-mir-10725 | CM025919.1 | 4639036 | 4639247 | CGCGTTCTTTCTAGTTTTGTGG | 43.48 | 23 | -55.1 | 0.845 | AH003316-RA | Plant transposase (Ptta/En/Spm family) | NA |
| 30 | ahy-mir1878-3p | CM025919.1 | 7383305 | 7383089 | TGAATTCTCAATCTGAAGAACT | 30.44 | 23 | -55.1 | 0.842 | AH006305-RA | zinc finger (C2H2 type) family protein | NA |
| 31 | ahy-mir7492m | CM025919.1 | 20674047 | 20673973 | GGACATGTTGTCATGTTCTATA | 34.79 | 23 | -61.4 | 0.821 | AH018794-RA | UDP-Glycosyltransferase superfamily protein | NA |
| 32 | ahy-mir015 | CM025919.1 | 22956935 | 22956752 | ATTCCCTCATCTAAGGCTAACC | 43.48 | 23 | -75.9 | 0.808 | AH009607-RA | G-box binding factor 3 | NA |
| 33 | ahy-mir-90 | CM025919.1 | 2311963 | 2311746 | CGTGTCACTACTGATATGTTGG | 43.48 | 23 | -53.4 | 0.803 | AH001647-RA | Leucine-rich repeat (LRR) family protein | NA |
| 34 | ahy-mir-375 | CM025919.1 | 12693957 | 12693867 | TACTTAAGTTAGTTCGTTTGGC | 34.79 | 23 | -37.7 | 0.78 | AH012471-RA | MAC/Perforin domain-containing protein | NA |
| 35 | ahy-mir097 | CM025919.1 | 20304451 | 20304516 | TTGATACACAAACTTCTACTTG | 30.44 | 23 | -50.1 | 0.766 | AH020583-RA | Small nuclear ribonucleoprotein family protein | NA |
| 36 | ahy-mir028 | CM025919.1 | 23614898 | 23615066 | TTAGACATCTCCCGGTTCAGCA | 47.83 | 23 | -64 | 0.756 | AH005883-RA | calmodulin-binding receptor-like cytoplasmic kinase 3 | NA |
| 37 | ahy-mir098 | CM025919.1 | 18354056 | 18353838 | AAAGCACACTTATTAAGTGCTT | 30.44 | 23 | -48.2 | 0.737 | AH014953-RA | malonyl-CoA decarboxylase family protein | NA |
| 38 | ahy-mir10205-3p | CM025919.1 | 9275082 | 9274866 | CCACCCATTTGTATCATTTTTG | 34.79 | 23 | -55.8 | 0.733 | AH013029-RA | 0 | NA |
| 39 | ahy-mir033 | CM025919.1 | 358596 | 358814 | AAGGCATATATATCATGTCAAG | 30.44 | 23 | -47.7 | 0.729 | AH015185-RA | cysteine-rich RLK (RECEPTOR-like protein kinase) 25 | NA |
| 40 | ahy-mir-7378-3p | CM025919.1 | 2925234 | 2925424 | AAGACATCTCCTATCACGAAGT | 39.14 | 23 | -45.6 | 0.728 | #N/A | NA | NA |
| 41 | ahy-mir827-5p | CM025919.1 | 9725568 | 9725727 | TGTTTGTTGATTGACATTGGAA | 30.44 | 23 | -31.7 | 0.723 | AH021714-RA | O-methyltransferase family protein | NA |
| 42 | ahy-mir-33b-5p | CM025919.1 | 23338553 | 23338718 | TCTGTGCATTGCTCTTGTCCAA | 43.48 | 23 | -51.1 | 0.708 | AH007810-RA | SAD1/UNC-84 domain protein 1 | NA |
| 43 | ahy-mir-9706b-3p | CM025919.1 | 21892930 | 21893144 | GATCGAGAAAACGCTTGATGCT | 43.48 | 23 | -53.4 | 0.702 | AH004212-RA | Pentatricopeptide repeat (PPR) superfamily protein | NA |
| 44 | ahy-mir-10799 | CM025919.1 | 6855380 | 6855303 | CAGCATATATAATGCCTTTTGA | 30.44 | 23 | -32.62 | 0.701 | AH007031-RA | Protein kinase family protein with ARM repeat domain | NA |
| 45 | ahy-mir9408-3p | CM025919.1 | 17259 | 17425 | AGTTCATCTTAGAACTTTCGTA | 30.44 | 23 | -34.9 | 0.699 | AH014418-RA | OSBP(oxysterol binding protein)-related protein 4C | NA |
| 46 | ahy-mir-16b-3p | CM025919.1 | 3215870 | 3215653 | ATACTAGTATTGTGCTGCAACA | 34.79 | 23 | -45.7 | 0.695 | AH021147-RA | cytidine deaminase 1 | NA |
| 47 | ahy-mir-15c-2-3p | CM025919.1 | 4173366 | 4173219 | TGAAGCAATTGCTGCTTTAGAG | 39.14 | 23 | -58.3 | 0.764 | AH017558-RA | hydroxyproline-rich glycoprotein family protein | tri nucleotide |
| 48 | ahy-mir-5443 | CM025919.1 | 3678689 | 3678475 | TGAAGGATTTTGATGTTAGCCA | 34.79 | 23 | -50.8 | 0.679 | AH001606-RA | SEC7-like guanine nucleotide exchange family protein | NA |
| 49 | ahy-mir-4195-3p | CM025919.1 | 5399880 | 5399682 | CTGGTAAAACATTGGCTTTTGG | 39.14 | 23 | -57.2 | 0.677 | AH006598-RA | syntaxin of plants 51 | NA |
| 50 | ahy-mir-308-5p | CM025919.1 | 7349789 | 7349974 | TACCCACAAGAATGATCTTCGA | 39.14 | 23 | -43.7 | 0.665 | AH004193-RA | 0 | NA |
MFE: Minimum free energy; MFEI: Minimum free energy index;