| S.No | miRNAid | INGC | Start Pos | End Pos | Sequence(5'-3') | GC% | miRNA Length | *MFE | *MFEI | miRNA's target gene | miRNA's Target Function | type of SSR |
|---|
| 1 | ahy-mir096 | CM025916.1 | 4595011 | 4595145 | CTTCGACAACAACTTCCTCATA | 39.14 | 23 | -68.7 | 1.039 | AH000715-RA | UTP:galactose-1-phosphate uridylyltransferases;ribose-5-phosphate adenylyltransferases | NA |
| 2 | ahy-mir-10143-3p | CM025916.1 | 32297933 | 32298035 | CCTGCAGGACTTTTGTCCATTG | 47.83 | 23 | -83.7 | 1.036 | AH004699-RA | Domain of unknown function (DUF23) | NA |
| 3 | ahy-mir9559-3p | CM025916.1 | 35074302 | 35074451 | TAGGGAATTTGGATTTGGAAAA | 30.44 | 23 | -50.6 | 1.002 | AH014667-RA | hydroxyproline-rich glycoprotein family protein | NA |
| 4 | ahy-mir-8362-3p | CM025916.1 | 33100536 | 33100689 | CACAAGTATCTTTAAAGTCAGA | 30.44 | 23 | -51.1 | 0.965 | AH003925-RA | 0 | NA |
| 5 | ahy-mir005 | CM025916.1 | 30054419 | 30054530 | AAATGTTGGAGACATATCATTG | 30.44 | 23 | -54.9 | 0.925 | AH010955-RA | Heat shock protein DnaJ with tetratricopeptide repeat | NA |
| 6 | ahy-mir-2002-3p | CM025916.1 | 357147 | 356932 | CTACTGATGTGGAACCAGCAGA | 47.83 | 23 | -94.9 | 0.919 | AH017925-RA | RAB GTPase homolog E1B | NA |
| 7 | ahy-mir5652 | CM025916.1 | 21291045 | 21291262 | AGAATCATGTGAATGAATTAGG | 30.44 | 23 | -59.8 | 0.914 | AH008657-RA | embryo defective 2170 | NA |
| 8 | ahy-mir-8327-3p | CM025916.1 | 578470 | 578684 | ATGAATTTGCAAGATGCATGAC | 34.79 | 23 | -59.2 | 0.891 | AH000062-RA | Golgi transport complex protein-related | NA |
| 9 | ahy-mir-10095-3p | CM025916.1 | 4450960 | 4451134 | ATGACAAAGCCTTGCTTCAAAG | 39.14 | 23 | -41.4 | 0.874 | AH005190-RA | histidine kinase 3 | NA |
| 10 | ahy-mir-217-3p | CM025916.1 | 6618255 | 6618393 | GATCTATCCTCATGCATGGATA | 39.14 | 23 | -59.4 | 0.872 | AH008629-RA | 0 | NA |
| 11 | ahy-mir11288c-3p | CM025916.1 | 5040920 | 5041141 | TTGGCTGAATTGGGAGTATTGT | 39.14 | 23 | -57.4 | 0.868 | AH000507-RA | hydroxyproline-rich glycoprotein family protein | NA |
| 12 | ahy-mir-5862-3p | CM025916.1 | 30415430 | 30415648 | ACTTCTGCATTACAAGAAGCAG | 39.14 | 23 | -46.1 | 0.866 | AH002461-RA | MADS-box transcription factor family protein | NA |
| 13 | ahy-mir-11621-5p | CM025916.1 | 20267902 | 20267689 | TTTTGTCGTTGCACATGTTCTT | 34.79 | 23 | -43.4 | 0.861 | AH017797-RA | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | NA |
| 14 | ahy-mir11318 | CM025916.1 | 20768294 | 20768402 | CAGTGGTATGTACCACTGTCAA | 43.48 | 23 | -66.3 | 0.852 | AH001215-RA | acetoacetyl-CoA thiolase 2 | NA |
| 15 | ahy-mir-10499a-3p | CM025916.1 | 4389223 | 4389013 | AAAACTCTTGGAGAGTGTTTGG | 39.14 | 23 | -46.6 | 0.839 | AH008664-RA | Protein of unknown function (DUF1162) | NA |
| 16 | ahy-mir395e-5p | CM025916.1 | 34673858 | 34674055 | TTCCTTACAAGAAAGAATGAGT | 30.44 | 23 | -48.6 | 0.743 | AH008431-RA | 0 | mono nucleotide |
| 17 | ahy-mir9759 | CM025916.1 | 33858230 | 33858143 | TCAATGTTAAATTGTACTTGGG | 30.44 | 23 | -32.2 | 0.82 | AH006158-RA | 0 | NA |
| 18 | ahy-mir-12340-5p | CM025916.1 | 8066884 | 8067033 | ATGTGAGTAAAAGAGAAGCTGT | 34.79 | 23 | -51.2 | 0.813 | AH009350-RA | Cytochrome b-c1 complex, subunit 8 protein | NA |
| 19 | ahy-mir7127b | CM025916.1 | 35022844 | 35022627 | TTTGAAACTCATCGAAAGCTAC | 34.79 | 23 | -45.4 | 0.806 | AH009444-RA | Sec14p-like phosphatidylinositol transfer family protein | NA |
| 20 | ahy-mir-10029-3p | CM025916.1 | 29760608 | 29760823 | TTTTCTTAACCTTAACCACTTC | 30.44 | 23 | -52.1 | 0.796 | AH014816-RA | CBL-interacting protein kinase 12 | NA |
| 21 | ahy-mir020 | CM025916.1 | 1068936 | 1068853 | TTGGAAGGAGTTTTATCAGTAT | 30.44 | 23 | -44.4 | 0.793 | AH009268-RA | 0 | NA |
| 22 | ahy-mir-2a-2-5p | CM025916.1 | 10485255 | 10485470 | CTATGAACCATTTTGTGAGTCA | 34.79 | 23 | -59.2 | 0.792 | AH000841-RA | flavin-monooxygenase glucosinolate S-oxygenase 3 | NA |
| 23 | ahy-mir-76 | CM025916.1 | 21859113 | 21858935 | GAAGAAGCTTCATAAACCAGGA | 39.14 | 23 | -38 | 0.79 | AH001283-RA | TraB family protein | NA |
| 24 | ahy-mir-234-5p | CM025916.1 | 29968758 | 29968555 | CAATTGTTTGAGAGAATAGCAT | 30.44 | 23 | -41.3 | 0.789 | AH017711-RA | CTP synthase family protein | NA |
| 25 | ahy-mir-548c | CM025916.1 | 9875412 | 9875267 | CAAAAGTACTTGCAAAATTCAG | 30.44 | 23 | -40 | 0.644 | AH001930-RA | ferredoxin 3 | mono nucleotide |
| 26 | ahy-mir-9960 | CM025916.1 | 21348149 | 21348304 | ATGGTGGAGGTGTTAACCAGAT | 43.48 | 23 | -60.7 | 0.763 | AH001145-RA | 0 | NA |
| 27 | ahy-mir025 | CM025916.1 | 30648490 | 30648285 | GAGATTTGGAGTTAATGGGGGA | 43.48 | 23 | -44 | 0.761 | AH001994-RA | peptide deformylase 1A | NA |
| 28 | ahy-mir-3848-3p | CM025916.1 | 29274520 | 29274734 | GGTAGTTAAGTGGGTATTTATA | 30.44 | 23 | -46.3 | 0.761 | AH001822-RA | GTP binding protein beta 1 | NA |
| 29 | ahy-mir-206-5p | CM025916.1 | 29430844 | 29430615 | CAATGTTAGGGTATATAACGTA | 30.44 | 23 | -49.5 | 0.756 | AH008075-RA | exostosin family protein | NA |
| 30 | ahy-mir-10372b-3p | CM025916.1 | 12056164 | 12055947 | TGCTCTATTGAAAAATGTGATG | 30.44 | 23 | -30.1 | 0.755 | AH004283-RA | AP2/B3-like transcriptional factor family protein | NA |
| 31 | ahy-mir-183-3p | CM025916.1 | 30256328 | 30256542 | TTATGGTTCAACAATATGGGAT | 30.44 | 23 | -49.4 | 0.755 | AH014676-RA | Calcium-dependent ARF-type GTPase activating protein family | NA |
| 32 | ahy-mir-252b-5p | CM025916.1 | 35298942 | 35298725 | AAAGTAGTTGCTTACTCCTTTT | 30.44 | 23 | -50 | 0.754 | AH002428-RA | 0 | NA |
| 33 | ahy-mir-4000i-3p | CM025916.1 | 15660625 | 15660722 | ATGCTTGAATCATTGCAAGTTA | 30.44 | 23 | -49.3 | 0.753 | AH016102-RA | Protein phosphatase 2A, regulatory subunit PR55 | NA |
| 34 | ahy-mir-498 | CM025916.1 | 4313312 | 4313121 | CATTTATTTCAAGCTGGGTAAG | 34.79 | 23 | -45.1 | 0.737 | AH009151-RA | armadillo repeat kinesin 2 | NA |
| 35 | ahy-mir032 | CM025916.1 | 4156368 | 4156544 | ATGATCAGAATGAAGATGAGTA | 30.44 | 23 | -34.8 | 0.733 | AH000439-RA | DNA repair metallo-beta-lactamase family protein | NA |
| 36 | ahy-mir-3117 | CM025916.1 | 3840585 | 3840805 | CACAACATGTGAGTCCTATTGT | 39.14 | 23 | -53.5 | 0.727 | AH020785-RA | methyltransferase 1 | NA |
| 37 | ahy-mir6208 | CM025916.1 | 22534145 | 22533928 | TCTTGATGCACTCATCAAGATC | 39.14 | 23 | -55.2 | 0.727 | AH005397-RA | NAD(P)-binding Rossmann-fold superfamily protein | NA |
| 38 | ahy-mir4341 | CM025916.1 | 29461284 | 29461460 | AAGTTTAACATCTTGTACCAGC | 34.79 | 23 | -54.5 | 0.719 | AH001872-RA | target of rapamycin | NA |
| 39 | ahy-mir-10358-3p | CM025916.1 | 7710099 | 7710193 | GGATCGAGGAGCGATTGCTAGC | 56.53 | 23 | -64 | 0.717 | AH017515-RA | U5 small nuclear ribonucleoprotein helicase | NA |
| 40 | ahy-mir-12461-3p | CM025916.1 | 8936979 | 8936757 | TATTAGTGCTGATCATTTTGTG | 30.44 | 23 | -45.3 | 0.716 | AH011156-RA | pentatricopeptide (PPR) repeat-containing protein | NA |
| 41 | ahy-mir395v | CM025916.1 | 35689078 | 35689207 | ACACTCTTGAAGTATTTGGAGG | 39.14 | 23 | -53.2 | 0.716 | AH011052-RA | pyrimidine 2 | NA |
| 42 | ahy-mir-3363 | CM025916.1 | 29477625 | 29477784 | AAGCAATCCACAAATACGTAAG | 34.79 | 23 | -46 | 0.711 | AH011758-RA | Seven transmembrane MLO family protein | NA |
| 43 | ahy-mir-216b-5p | CM025916.1 | 25146173 | 25146387 | TTGAGGGAAATCATCTCTGCAG | 43.48 | 23 | -45 | 0.709 | AH001521-RA | 0 | NA |
| 44 | ahy-mir-3824-5p | CM025916.1 | 21543634 | 21543848 | AAATTGGTTCAAAGGACGATGT | 34.79 | 23 | -53.6 | 0.707 | AH023348-RA | phloem protein 2-B10 | NA |
| 45 | ahy-mir-87b-3p | CM025916.1 | 21798446 | 21798655 | TGTTAGGAAAGCTTCAACCACC | 43.48 | 23 | -63.1 | 0.694 | AH021378-RA | 0 | NA |
| 46 | ahy-mir048 | CM025916.1 | 27392785 | 27392999 | TTTTAGAAACGATGAAGATAGG | 30.44 | 23 | -45.3 | 0.692 | AH007903-RA | Protein kinase superfamily protein | NA |
| 47 | ahy-mir6459b | CM025916.1 | 28011089 | 28010874 | TTGGCAGCAATTTGGGCTTCAT | 43.48 | 23 | -47.7 | 0.69 | AH001749-RA | Papain family cysteine protease | NA |
| 48 | ahy-mir-9391-5p | CM025916.1 | 25938936 | 25938772 | TGTTTTATAAAATGGTTGGGCC | 34.79 | 23 | -45.1 | 0.69 | AH013046-RA | phosphoprotein phosphatase inhibitors | NA |
| 49 | ahy-mir-12300-3p | CM025916.1 | 8856731 | 8856617 | TGGAAGAAAGTAGCAAAAATCC | 34.79 | 23 | -51.3 | 0.686 | AH004105-RA | LAG1 longevity assurance homolog 3 | NA |
| 50 | ahy-mir-1985-5p | CM025916.1 | 30718639 | 30718547 | AAAAAATGGCAAGCAACCAACA | 34.79 | 23 | -51.3 | 0.686 | AH019919-RA | COP1-interacting protein-related | NA |
MFE: Minimum free energy; MFEI: Minimum free energy index;