Retrive data

miRNA INFORMATION

S.No miRNAid INGC Start Pos End Pos Sequence(5'-3') GC% miRNA Length *MFE *MFEI miRNA's target gene miRNA's Target Function type of SSR
1 ahy-mir-100a-3p CM025931.1 1678443 1678256 TGAGGCCTTAAAATCAAACATC 34.79 23 -34.3 0.709 AH005579-RA GDSL-like Lipase/Acylhydrolase superfamily protein NA
2 ahy-mir-245 CM025931.1 17165701 17165917 CACTTTAGTGGTCCCCTCCACT 52.18 23 -80.5 0.701 AH010416-RA plant U-box 9 NA
3 ahy-mir-128a-5p CM025931.1 5767692 5767853 TTGTTGTATGCACAGACAGTGC 43.48 23 -66.1 0.697 AH007283-RA RNAse l inhibitor protein 1 NA
4 ahy-mir-5361-3p CM025931.1 18256222 18256075 CGGGTTTATGTCTTCCATTTTC 39.14 23 -38 0.684 AH004403-RA trehalose-phosphatase/synthase 9 NA
5 ahy-mir-4818e-5p CM025931.1 9876571 9876718 TCATTAGGTCTGTGTGCAATTA 34.79 23 -33.7 0.682 AH002717-RA RNA-binding KH domain-containing protein NA
6 ahy-mir9665-3p CM025931.1 8855811 8855667 TCATTTGAGTTTAGATGGGTCT 34.79 23 -50.9 0.681 AH002025-RA tetratricopeptide repeat (TPR)-containing protein NA
7 ahy-mir-2571-5p CM025931.1 13325543 13325325 TATCTATTGATCATCACAGGAA 30.44 23 -44.1 0.674 AH023385-RA 0 NA
8 ahy-mir-9681-3p CM025931.1 7868167 7868384 AGTGTTGCACATACAATACTAC 34.79 23 -44 0.673 AH014024-RA epidermal patterning factor 1 NA
9 ahy-mir5492 CM025931.1 7838459 7838552 CTCCTAAATAGATATGGAGAGA 34.79 23 -50.3 0.673 #N/A NA NA
10 ahy-mir-8380-5p CM025931.1 3647218 3647432 CAACATACCCATCTTATGTCGG 43.48 23 -63.8 0.67 AH001094-RA pentatricopeptide repeat 336 NA
11 ahy-mir159d CM025931.1 73380 73597 CATAAGATGCATAGCTATGGGG 43.48 23 -48.5 0.668 AH004690-RA zinc ion binding NA
12 ahy-mir842-3p CM025931.1 2673282 2673490 TCGGATCTGACCATGTCATAAA 39.14 23 -54.1 0.662 AH015542-RA NADH dehydrogenase family protein NA
13 ahy-mir060 CM025931.1 3171095 3171310 TTAGCAGTGCTAATCTTCGTGT 39.14 23 -55.9 0.655 AH023021-RA Protein of unknown function (DUF620) NA
14 ahy-mir-9418 CM025931.1 1758555 1758338 AATTCCAAGCTCATCAATGGAA 34.79 23 -48.7 0.651 AH012231-RA Haloacid dehalogenase-like hydrolase (HAD) superfamily protein NA
15 ahy-mir064 CM025931.1 3782855 3782676 ATGAGAAGGGCCTAATTCCAAG 43.48 23 -58.7 0.646 AH002758-RA GDSL-like Lipase/Acylhydrolase superfamily protein NA
16 ahy-mir-3479b-3p CM025931.1 14752259 14752141 AGTAGTGCAATCGATACCGAAT 39.14 23 -55.1 0.646 AH015555-RA receptor-like kinase 1 NA
17 ahy-mir-1720-3p CM025931.1 6378346 6378132 CCAAAAGCCAAAGCAACAAGAG 43.48 23 -60.8 0.636 AH023218-RA arabinogalactan protein 14 NA
18 ahy-mir-7900-5p CM025931.1 10925446 10925231 TCCTCCTTCATGGGGTGTACGC 56.53 23 -49.3 0.632 AH021665-RA Dof-type zinc finger DNA-binding family protein NA
19 ahy-mir156a-3p CM025931.1 8122039 8121897 TTTTCCTTGCTCACTTCTTCAA 34.79 23 -47.8 0.63 AH016414-RA 0 NA
20 ahy-mir477-5p CM025931.1 11485651 11485865 CCTCGAAACATCAAGGGCTCTG 52.18 23 -48.8 0.624 #N/A NA NA
21 ahy-mir164e-3p CM025931.1 4423321 4423431 ACAACATGGTCTAGGAGGGGAG 52.18 23 -53 0.616 AH023119-RA Transducin/WD40 repeat-like superfamily protein NA
22 ahy-mir-2156a-5p CM025931.1 12061868 12061654 ATTAAAGTGGGATGACCCAAAA 34.79 23 -43.7 0.613 AH016447-RA delta 1-pyrroline-5-carboxylate synthase 2 NA
23 ahy-mir-9503 CM025931.1 380481 380348 CGAAGTTCGGATTTTGAAAGAG 39.14 23 -52.2 0.612 AH019092-RA trithorax-like protein 2 NA
24 ahy-mir-12347-3p CM025931.1 2258386 2258576 CCAGTGGTCGTACCACAGGTAT 52.18 23 -69.8 0.611 AH008119-RA Met-10+ like family protein NA
25 ahy-mir-369 CM025931.1 5269844 5270059 TGTTCTTAAAAAAAGACCAACC 30.44 23 -33.7 0.608 AH010401-RA calreticulin 1a NA
26 ahy-mir-30c-3p CM025931.1 8716334 8716262 TTGAATCTTCTCCCAGCAAATT 34.79 23 -46.1 0.608 AH017469-RA AGAMOUS-like 8 NA
27 ahy-mir-7638 CM025931.1 12456343 12456217 CATAGCTCCTTTGAAACATGCT 39.14 23 -49.7 0.608 AH023349-RA Exostosin family protein NA
28 ahy-mir-1991-3p CM025931.1 7450593 7450371 ATTGTTTATTCTCGTTTCTCCC 34.79 23 -32.4 0.601 AH000779-RA 0 NA
29 ahy-mir101 CM025931.1 3171095 3171310 GAATGATGATCATCGACTGCAG 43.48 23 -49.9 0.601 AH023021-RA Protein of unknown function (DUF620) NA
30 ahy-mir-H14-5p JPXE02000017.1 102596 102444 CACCATGTAGACTGGTGGGATC 52.18 23 -39.5 0.631 AH023706-RA 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein NA
31 ahy-mir-5416 JPXE02000018.1 72145 72355 TTGTTGGGGTTTCCTTTTCTTT 34.79 23 -54.3 0.839 AH017489-RA 0 NA
32 ahy-mir11029 JPXE02000018.1 318559 318342 TAAAGGCGTCTATAGTAGAGGT 39.14 23 -51.5 0.612 AH001352-RA Secretory carrier membrane protein (SCAMP) family protein NA
33 ahy-mir-3802-5p JPXE02000018.1 303752 303540 AGTCAGAAGTGAATGACGAGTC 43.48 23 -57.3 0.602 AH017172-RA stomatal cytokinesis defective / SCD1 protein (SCD1) NA
34 ahy-mir-2766-3p JPXE02000019.1 25832 25626 CATTGCCACGATTCGACAATGA 43.48 23 -52.2 0.656 AH011945-RA P-loop containing nucleoside triphosphate hydrolases superfamily protein NA
35 ahy-mir-3931-3p JPXE02000022.1 22113 22330 CCATCTACTCAAAGTACAAAGA 34.79 23 -51.5 0.679 AH019008-RA Phototropic-responsive NPH3 family protein NA
36 ahy-mir5494 JPXE02000022.1 119656 119439 GGTTTTATAGGAGGTAAAGTTG 34.79 23 -45.3 0.606 AH000275-RA Adaptin ear-binding coat-associated protein 1 NECAP-1 NA
37 ahy-mir481d JPXE02000024.1 186647 186461 AACCATCAGCTTAAGCTTTTGG 39.14 23 -68.2 0.917 AH007280-RA Tetratricopeptide repeat (TPR)-like superfamily protein NA
38 ahy-mir831-5p JPXE02000029.1 28253 28036 TGTGGTACAAGTAGATGTACCC 43.48 23 -67.8 0.732 AH010608-RA 0 NA
39 ahy-mir-4100-3p JPXE02000040.1 95197 95096 AGAACATCTAATGATGTTAGAC 30.44 23 -38.6 0.616 AH010785-RA Pseudouridine synthase family protein NA
40 ahy-mir-293-5p JPXE02000044.1 22133 22347 CATATATAAAATGTGTGACACC 30.44 23 -43.3 0.697 AH003528-RA Pollen Ole e 1 allergen and extensin family protein NA
41 ahy-mir11466c JPXE02000045.1 10438 10224 TACGACGTAAGCCTTGTAGACG 47.83 23 -67.4 0.898 AH007982-RA Leucine-rich repeat transmembrane protein kinase NA
42 ahy-mir-978b JPXE02000046.1 27784 27929 CTTGGTTGAAAAGCCAGTGGCG 52.18 23 -53.3 0.604 AH008890-RA vernalization5/VIN3-like NA
43 ahy-mir1097 JPXE02000049.1 20333 20548 TTTAGTGAATAACAACAATGGC 30.44 23 -44.5 0.713 AH010388-RA 0 tri nucleotide
44 ahy-mir7980b-5p JPXE02000069.1 86663 86448 TTGATGATGAGATGGAAGAGAA 34.79 23 -53.9 0.838 AH005041-RA myb domain protein 105 tri nucleotide
45 ahy-mir-456-5p JPXE02000076.1 32726 32940 ACGCTGCCACAAGGCTGGGAAG 60.87 23 -66.9 0.617 AH023668-RA 0 NA
46 ahy-mir-8349-5p JPXE02000078.1 19931 19765 ATCGAGTATCGTGCAATAAAAC 34.79 23 -53.7 0.705 AH003337-RA 0 hexa nucleotide
47 ahy-mir-8329-5p JPXE02000103.1 39550 39335 TCACTTAATGGTCAGAGCAGCT 43.48 23 -57.2 0.612 #N/A NA NA
48 ahy-mir051 JPXE02000148.1 8444 8368 AATGGATTGTAATCAGGAGGAA 34.79 23 -50.8 0.679 AH012816-RA Lipin family protein NA
49 ahy-mir053 JPXE02000172.1 24467 24681 CTGTAGCTTATGATTCTAGGGT 39.14 23 -56.9 0.673 AH000950-RA Mitochondrial transcription termination factor family protein NA
50 ahy-mir026 JPXE02000173.1 26661 26442 GAAATCTTTCTACTCTTGCATG 34.79 23 -49.7 0.76 AH016621-RA Pentatricopeptide repeat (PPR) superfamily protein NA

MFE: Minimum free energy; MFEI: Minimum free energy index;


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