Retrive data

miRNA INFORMATION

S.No miRNAid INGC Start Pos End Pos Sequence(5'-3') GC% miRNA Length *MFE *MFEI miRNA's target gene miRNA's Target Function type of SSR
1 ahy-mir-216b-3p CM025927.1 9565607 9565420 AGCAATCTCAATAGGTATCAAA 30.44 23 -43.5 0.665 AH018703-RA phospholipase D beta 1 NA
2 ahy-mir3630-5p CM025927.1 556478 556263 TGGTGACAAAATCGTCACTTGG 43.48 23 -50.2 0.664 AH018044-RA POZ/BTB containin G-protein 1 NA
3 ahy-mir-1421ad-5p CM025927.1 17604302 17604160 GACAGTGATGAATAACCTGTAT 34.79 23 -49 0.655 AH012135-RA Divalent ion symporter NA
4 ahy-mir1513c CM025927.1 828225 828046 AATACTTTCTCTCAGACTAAAG 30.44 23 -42.5 0.65 AH011089-RA prohibitin 1 NA
5 ahy-mir2949c CM025927.1 12588769 12588578 AACTGGATTTGCAGTTTCGACT 39.14 23 -54.4 0.647 AH023237-RA Calcium-dependent lipid-binding (CaLB domain) family protein NA
6 ahy-mir-216b-3p CM025927.1 9565607 9565420 AGAAGCCACTGTGGCTATTATT 39.14 23 -37.7 0.647 AH018703-RA receptor-like protein kinase 2 NA
7 ahy-mir-5933 CM025927.1 2225023 2225217 ATGGATGTTTTATGGTGATTGG 34.79 23 -35.4 0.636 AH014250-RA 1-amino-cyclopropane-1-carboxylate synthase 7 NA
8 ahy-mir-7583a-3p CM025927.1 11174664 11174878 ATCACAAATTGATGCATACCCT 34.79 23 -48.1 0.626 AH009412-RA Tetratricopeptide repeat (TPR)-like superfamily protein NA
9 ahy-mir-71b-3p CM025927.1 2545907 2546094 TAGGGAAAGTCTTGCTTGTTTG 39.14 23 -43.1 0.622 AH011828-RA alpha/beta-Hydrolases superfamily protein NA
10 ahy-mir-8805 CM025927.1 20128398 20128183 TCATTCTTATCCAGCTCCTTTG 39.14 23 -52.7 0.618 AH019270-RA CCCH-type zinc finger family protein NA
11 ahy-mir-5594-5p CM025927.1 560434 560219 TCAGCAAAAGAACTGATGCGAA 39.14 23 -53.6 0.617 AH021949-RA guanyl-nucleotide exchange factors;GTPase binding;GTP binding NA
12 ahy-mir-3858b-3p CM025927.1 4470889 4471103 AACAAGTCTAGCTTCTCTAATG 34.79 23 -46.7 0.616 AH019870-RA importin alpha isoform 1 NA
13 ahy-mir-5438 CM025927.1 12555585 12555458 ATGGTGACATCTTCTGAAGCAG 43.48 23 -59.4 0.615 AH006555-RA RNA-binding (RRM/RBD/RNP motifs) family protein NA
14 ahy-mir-729-5p CM025927.1 10642065 10641967 CATAACCAGGGTACGATTTAAC 39.14 23 -37 0.614 AH018777-RA xyloglucanase 113 NA
15 ahy-mir-5876 CM025927.1 3239273 3239118 ACCCCTCATTTCTAGCCCAAAG 47.83 23 -62.9 0.609 AH004511-RA PLAT/LH2 domain-containing lipoxygenase family protein NA
16 ahy-mir11110b-3p CM025927.1 4620971 4621185 AGATTTTTTGTCTTTTGGGGTA 30.44 23 -39.8 0.608 AH022654-RA Clathrin, heavy chain NA
17 ahy-mir4354 CM025927.1 9357939 9357724 ATCGATCCAATTGTACGGTAAA 34.79 23 -46.7 0.608 AH006596-RA ARM repeat superfamily protein NA
18 ahy-mir8576 CM025927.1 6390972 6390758 CAGCCATCATATTAACATGAAA 30.44 23 -39.6 0.605 AH022362-RA RING/U-box superfamily protein NA
19 ahy-mir-8448-3p CM025927.1 2162320 2162106 GAGGACGTTTAACCTCCATAGC 47.83 23 -59.3 0.605 AH018212-RA 0 NA
20 ahy-mir-4928-3p CM025927.1 21466342 21466556 AGTTCTCTGATATCAACAGCAA 34.79 23 -45.1 0.603 AH019337-RA P-loop containing nucleoside triphosphate hydrolases superfamily protein NA
21 ahy-mir7504g CM025927.1 12526508 12526314 TTAAAGATTTGTCATTTGGGCT 30.44 23 -39.4 0.602 AH017446-RA ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein NA
22 ahy-mir092 CM025927.1 4779932 4779714 TTAAGCGAGCAACACTGGAAAA 39.14 23 -33.2 0.602 AH018397-RA root and pollen arfgap NA
23 ahy-mir-1-5p CM025928.1 14519247 14519031 TATTCATGTGTTGAATGTAAGG 30.44 23 -58 1.314 AH020895-RA Exostosin family protein NA
24 ahy-mir-12-5p CM025928.1 15629237 15629353 AGTAAGATTTTCATTCTCATCC 30.44 23 -49 1.142 AH020167-RA DEA(D/H)-box RNA helicase family protein NA
25 ahy-mir-10555 CM025928.1 11904923 11905017 TAAGGAAGCTGCTGCTTATTCT 39.14 23 -58.7 1.014 AH003920-RA GRAM domain family protein NA
26 ahy-mir-1421w-3p CM025928.1 6799353 6799568 CGTTGATCGAGAAGATCACCGA 47.83 23 -61.7 0.949 AH004950-RA Protein kinase superfamily protein NA
27 ahy-mir1517 CM025928.1 14088448 14088662 TGCTGAGCTATCAACGACATTG 43.48 23 -59.5 0.912 AH020096-RA time for coffee NA
28 ahy-mir-10269-3p CM025928.1 12864950 12865132 CATGATGGTTTGAATAAGATAG 30.44 23 -45.8 0.87 AH013173-RA sorting nexin 2B NA
29 ahy-mir-9574-5p CM025928.1 7346811 7346598 TAGCTTTCAGACATGAAAGCTA 34.79 23 -61.7 0.825 AH013348-RA ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding NA
30 ahy-mir018 CM025928.1 15688303 15688172 TTGTTAAACCACTGAGAAAAGT 30.44 23 -52.2 0.798 AH020164-RA P-loop containing nucleoside triphosphate hydrolases superfamily protein NA
31 ahy-mir-19c-5p CM025928.1 14205586 14205728 CTTCGAATGCAAAGCAGCAGCA 47.83 23 -49.3 0.775 AH000662-RA DNA/RNA polymerases superfamily protein NA
32 ahy-mir5649b CM025928.1 12028840 12029054 CATGTTGGTTATTAGTTAGTCT 30.44 23 -50.7 0.775 AH008795-RA WHIRLY 2 NA
33 ahy-mir11533a CM025928.1 15721885 15722080 GGAGAATTATCACAAGCTAATG 34.79 23 -53.1 0.763 AH017945-RA NAD(P)-binding Rossmann-fold superfamily protein NA
34 ahy-mir-72-3p CM025928.1 15796608 15796394 TTGATGTAGCATGGTTGCTTAA 34.79 23 -56.5 0.756 AH023740-RA Tetratricopeptide repeat (TPR)-like superfamily protein NA
35 ahy-mir12177 CM025928.1 11918649 11918429 AGAAGAACAGATGGTAAAAAGT 30.44 23 -49.2 0.752 AH021170-RA loricrin-related NA
36 ahy-mir-22-3p CM025928.1 15709866 15709744 ATTCAATTGCGAAGTTGAAGTT 30.44 23 -49.8 0.751 AH020163-RA 0 NA
37 ahy-mir-11614-5p CM025928.1 12773114 12773229 TGTGGATGATAGTTCATATGAG 34.79 23 -56.1 0.75 AH017410-RA Ribosomal protein L2 family NA
38 ahy-mir8007a-3p CM025928.1 10034008 10034179 CTTCACTTTTCATTTCCCATTT 30.44 23 -49.3 0.743 AH021603-RA Protein of unknown function (DUF300) NA
39 ahy-mir034 CM025928.1 798024 797907 AATAGTTGCTTCTATCTCTTCC 34.79 23 -55 0.725 AH019404-RA TPX2 (targeting protein for Xklp2) protein family NA
40 ahy-mir-11050-3p CM025928.1 12864950 12865096 CATAGCATGTATAATCATGCAA 30.44 23 -47.5 0.716 AH008895-RA binding NA
41 ahy-mir-6052-5p CM025928.1 16342238 16342458 TCAGCTAGTGGTTCTAGCTTTT 39.14 23 -59.7 0.71 AH004030-RA cytochrome B5 isoform A NA
42 ahy-mir045 CM025928.1 15699324 15699110 ATCAATACCTAGACTAACTGCA 34.79 23 -52.5 0.702 AH020164-RA P-loop containing nucleoside triphosphate hydrolases superfamily protein NA
43 ahy-mir6175 CM025928.1 15792610 15792452 GGGTATTTAAAAGCCACAAAGA 34.79 23 -52.5 0.702 AH002422-RA DNA polymerase V family NA
44 ahy-mir2600e CM025928.1 15728829 15728738 ACTAAAGCAATTGTGATTGCCG 39.14 23 -49.6 0.7 AH002532-RA C2 calcium/lipid-binding and GRAM domain containing protein NA
45 ahy-mir-3881-5p CM025928.1 12337867 12338081 AATTATGTTGAAGATTCCCAGG 34.79 23 -52.9 0.694 AH016947-RA GYF domain-containing protein NA
46 ahy-mir10418 CM025928.1 17489015 17488800 ATCAAACAAGAAGTAATCCAAC 30.44 23 -45.1 0.689 AH017999-RA Pentatricopeptide repeat (PPR) superfamily protein NA
47 ahy-mir-10231-5p CM025928.1 12084339 12084450 TGATAGTTCAGTTCTATACAAG 30.44 23 -44.7 0.683 AH007561-RA recovery protein 3 NA
48 ahy-mir7807b-3p CM025928.1 16913694 16913820 CAACTCATTTTCATATATGAGG 30.44 23 -44.2 0.679 AH011156-RA pentatricopeptide (PPR) repeat-containing protein NA
49 ahy-mir3631b-3p CM025928.1 17913492 17913277 TGTATTCTTGTATCATCCAACA 30.44 23 -44.3 0.677 AH020500-RA global transcription factor group B1 NA
50 ahy-mir-10367-5p CM025928.1 9143726 9143599 CCGTATTGAATAGATGGTGAGG 43.48 23 -62.9 0.67 AH019708-RA Nucleoporin autopeptidase NA

MFE: Minimum free energy; MFEI: Minimum free energy index;


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