Retrive data

miRNA INFORMATION

S.No miRNAid INGC Start Pos End Pos Sequence(5'-3') GC% miRNA Length *MFE *MFEI miRNA's target gene miRNA's Target Function type of SSR
1 ahy-mir090 CM025917.1 31740963 31740744 ACCGTACCGGAACTCGGTTAGC 56.53 23 -65.6 0.608 #N/A NA NA
2 ahy-mir-8908e CM025917.1 39305021 39304804 ATGCTGCTGTTCAGTACCTTGA 43.48 23 -58.6 0.607 AH004274-RA Glycosyl hydrolase family 38 protein NA
3 ahy-mir10437 CM025917.1 28264710 28264925 CTGAGTGTTTGAACAACATACG 39.14 23 -51.9 0.606 AH007416-RA Nucleotide-diphospho-sugar transferase family protein NA
4 ahy-mir-2780a-3p CM025917.1 37350651 37350833 AAGGAAATCGTTTCAATGACGT 34.79 23 -45 0.602 AH004450-RA Copper amine oxidase family protein NA
5 ahy-mir-8930 CM025918.1 3112917 3113135 ATTGTTGGGCTAGTTTTCTCTA 34.79 23 -64.3 1.275 AH009748-RA tornado 1 NA
6 ahy-mir-8379b-5p CM025918.1 47896 48111 AGATGCTGTCAAAAGACAGCTG 43.48 23 -62.2 1.037 #N/A NA NA
7 ahy-mir-2498a-5p CM025918.1 10650 10437 TATAGCATACTTATGGGAAGTA 30.44 23 -41.4 0.979 AH004686-RA 0 NA
8 ahy-mir6296 CM025918.1 21752776 21752560 AAAGATTAAGAGGGTCTCATCA 34.79 23 -67 0.896 AH006129-RA Integrase-type DNA-binding superfamily protein hexa nucleotide
9 ahy-mir-196a-3p CM025918.1 6127826 6128042 AAATCCAACAAACGACATGGAT 34.79 23 -55 0.753 AH005286-RA P-loop containing nucleoside triphosphate hydrolases superfamily protein hexa nucleotide
10 ahy-mir11180-3p CM025918.1 504677 504486 TAAAATCGAAATTGAGAACGGA 30.44 23 -40.7 0.916 AH004738-RA F-box/RNI-like superfamily protein NA
11 ahy-mir-133a-1-5p CM025918.1 6547260 6547046 GTGGTGTAAAATGGAATTCAAG 34.79 23 -44.1 0.887 AH005325-RA Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein NA
12 ahy-mir-10949 CM025918.1 27830571 27830356 AAGAGGAAGTACTGTTTTGATA 30.44 23 -54.4 0.885 AH001989-RA O-fucosyltransferase family protein NA
13 ahy-mir-548i-3p CM025918.1 4145838 4146053 CTATGACTTTATGCTACATCCA 34.79 23 -43.7 0.855 AH005125-RA 0 NA
14 ahy-mir-2c-3p CM025918.1 7286585 7286371 AATATTGATGCAGTAACGGGAG 39.14 23 -57.4 0.853 AH011990-RA Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein NA
15 ahy-mir-11633-5p CM025918.1 26693627 26693845 ATCCTGAGACTTCAACCAAAAA 34.79 23 -39.9 0.75 AH019968-RA Flavin-binding monooxygenase family protein mono nucleotide
16 ahy-mir5636 CM025918.1 9573321 9573102 TGTTACATGTTGCAGAGCTTCC 43.48 23 -54.5 0.788 AH002742-RA S-adenosylmethionine synthetase 1 NA
17 ahy-mir-1419g-5p CM025918.1 16175548 16175443 AAGAAGACATATCTCTCAGTAA 30.44 23 -45.2 0.782 AH015370-RA RAN GTPase 3 NA
18 ahy-mir10216-5p CM025918.1 5267697 5267544 TGTTGATCTGATTACGTGGTTG 39.14 23 -62.2 0.775 AH008577-RA 0 NA
19 ahy-mir-1677b-3p CM025918.1 3143370 3143587 TTATCACCAAGCCCACTGATTC 43.48 23 -52.9 0.765 AH022419-RA 0 NA
20 ahy-mir1028b-3p CM025918.1 11378105 11377891 CGGTCCACATTGTGGACCTCAG 56.53 23 -93 0.758 AH006530-RA 0 NA
21 ahy-mir-1322 CM025918.1 5052975 5052757 AGCAGCAGCAACGGCAACACTA 52.18 23 -59.2 0.756 AH014685-RA Haloacid dehalogenase-like hydrolase (HAD) superfamily protein NA
22 ahy-mir-3793-5p CM025918.1 16032851 16032625 ACCTCGTGTTTTCCCCGATAAT 43.48 23 -47 0.756 AH001605-RA glutamate tRNA synthetase NA
23 ahy-mir827 CM025918.1 12779501 12779352 ATGATGTTCATCTGAAATGTTG 30.44 23 -34.2 0.754 AH005779-RA P-loop containing nucleoside triphosphate hydrolases superfamily protein NA
24 ahy-mir-246 CM025918.1 13705092 13704878 ACTAATTTACTTGGTCCGGGTA 39.14 23 -48.1 0.754 AH005057-RA RING/FYVE/PHD zinc finger superfamily protein NA
25 ahy-mir3513-5p CM025918.1 11219646 11219525 GAGTTTGTCAACAGTACAGATT 34.79 23 -47.7 0.749 AH002696-RA SAC3/GANP/Nin1/mts3/eIF-3 p25 family NA
26 ahy-mir-9597-3p CM025918.1 25557925 25558142 GATCCTGAAAGAGATAAGAATA 30.44 23 -42.8 0.748 AH006264-RA SNARE associated Golgi protein family NA
27 ahy-mir-1422e-5p CM025918.1 2670156 2669941 AGAACCATGGAAAAAGGTTTTT 30.44 23 -49.3 0.743 AH020008-RA chloroplast outer envelope protein 37 NA
28 ahy-mir004 CM025918.1 25385301 25385168 CTTCACATATAAAACGGTTTGT 30.44 23 -64.7 0.962 AH006255-RA indeterminate(ID)-domain 4 tri nucleotide
29 ahy-mir5035-3p CM025918.1 26882412 26882629 AGCTCATAGAAAGGTTATGATT 30.44 23 -46.5 0.937 AH015615-RA 0 tri nucleotide
30 ahy-mir099 CM025918.1 2245869 2245651 TTAGGTAGTGTTTGGGTTTTTT 30.44 23 -47.7 0.729 AH007417-RA Tetratricopeptide repeat (TPR)-like superfamily protein NA
31 ahy-mir827 CM025918.1 12779501 12779352 TGGCTATTTGACTGATGGTCAT 39.14 23 -61.2 0.727 AH005779-RA 0 NA
32 ahy-mir-122-3p CM025918.1 2488709 2488877 GCAGTGTAATAATTGACACCAA 34.79 23 -54.2 0.725 AH004957-RA beta glucosidase 40 NA
33 ahy-mir-7385g-3p CM025918.1 9375080 9374862 CATCTGACATTCTTTCTGGTGT 39.14 23 -61.2 0.724 AH005570-RA Remorin family protein NA
34 ahy-mir-7398i-3p CM025918.1 6441597 6441379 TTTGACTTTGTTGAGAGTAGGA 34.79 23 -53.1 0.71 AH001777-RA SUMO-activating enzyme 2 NA
35 ahy-mir-6309-3p CM025918.1 3059330 3059112 CAATACCTTGGTCTTCATTCCC 43.48 23 -48.7 0.709 AH005004-RA Protein of unknown function, DUF538 NA
36 ahy-mir042 CM025918.1 12699009 12699224 GATATATGTGGAATCAATAGGG 34.79 23 -53 0.709 AH019429-RA transducin family protein / WD-40 repeat family protein NA
37 ahy-mir047 CM025918.1 4365977 4366191 AGCAAGAAGCTCTAGTCTAAAG 39.14 23 -55.3 0.693 AH005141-RA WRKY family transcription factor family protein NA
38 ahy-mir11089b-3p CM025918.1 16320510 16320335 AGCAAAGAACCATGTTGAACAG 39.14 23 -47.3 0.691 AH005972-RA glutamate receptor 3.6 NA
39 ahy-mir049 CM025918.1 26649261 26649395 TGGGTATCCTTTCAATACCAAG 39.14 23 -54.2 0.689 AH016766-RA Dynamin related protein 4C NA
40 ahy-mir5383 CM025918.1 2353920 2354043 GATATCTCTGCCTACTCTACAT 39.14 23 -59 0.688 AH018738-RA ACT domain repeat 8 NA
41 ahy-mir-3145-3p CM025918.1 7937430 7937648 TCACTCAAAATAAAGGTGCATT 30.44 23 -33.8 0.686 AH005451-RA ARM repeat superfamily protein NA
42 ahy-mir-942 CM025918.1 9327316 9327116 TTAACAGCACCAAAACAGAGTT 34.79 23 -50.9 0.681 AH005564-RA HSP40/DnaJ peptide-binding protein NA
43 ahy-mir7784b-3p CM025918.1 13095875 13095679 ATGAGCAAGATGTACTCGTGTT 39.14 23 -48.4 0.676 AH005323-RA Pentatricopeptide repeat (PPR) superfamily protein NA
44 ahy-mir-9618-3p CM025918.1 3306917 3306700 AAATCAAAGATGGTGAACAAGG 34.79 23 -50.4 0.674 AH005997-RA 0 NA
45 ahy-mir-3835-5p CM025918.1 3346712 3346837 AAGTTTAGCAGTAATTCTCTTG 30.44 23 -44.1 0.674 AH010230-RA exocyst subunit exo70 family protein A1 NA
46 ahy-mir5025 CM025918.1 11586893 11587022 CATCTCTGTATATATGGACTAA 30.44 23 -43.9 0.671 AH005700-RA BTB and TAZ domain protein 4 NA
47 ahy-mir-2c-3p CM025918.1 7286585 7286371 CTCTAAAGGCAATGACATAGTT 34.79 23 -50.7 0.669 AH011990-RA Lipase class 3-related protein NA
48 ahy-mir-20a-3p CM025918.1 9797401 9797229 TGTAGTAGACATACTGCATTAT 30.44 23 -43.7 0.668 AH005636-RA PQ-loop repeat family protein / transmembrane family protein NA
49 ahy-mir7756-3p CM025918.1 5607187 5607404 AAATTGGCATGGAATTGAATGT 30.44 23 -44.1 0.665 AH000958-RA RING/U-box superfamily protein NA
50 ahy-mir-2791 CM025918.1 14240023 14240240 AGAGAGAATATGAGCTGTTATG 34.79 23 -48.8 0.662 AH019542-RA heat shock transcription factor B2A NA

MFE: Minimum free energy; MFEI: Minimum free energy index;


ICAR-Indian Agricultural Statistics Research Institute
Library Avenue, PUSA, New Delhi - 110 012