Retrive data

miRNA INFORMATION

S.No miRNAid INGC Start Pos End Pos Sequence(5'-3') GC% miRNA Length *MFE *MFEI miRNA's target gene miRNA's Target Function type of SSR
1 ahy-mir-15b-5p CM025916.1 5828429 5828283 AAAATGATCCAACATGGTTTCC 34.79 23 -51.1 0.683 AH000537-RA RNA binding Plectin/S10 domain-containing protein NA
2 ahy-mir-10767 CM025916.1 431791 431693 ATATAGGGGAAACTTATGAACT 30.44 23 -37.5 0.681 AH004978-RA Zincin-like metalloproteases family protein NA
3 ahy-mir6151i CM025916.1 32793853 32794038 AATCTTGAGGAGTTGGATTAGC 39.14 23 -57.2 0.68 AH005793-RA ubiquitin-conjugating enzyme 16 NA
4 ahy-mir-M1-6-3p CM025916.1 25326847 25327061 ATGCTGAAACTGTGTCATCATT 34.79 23 -55 0.735 AH007178-RA Cyclopropane-fatty-acyl-phospholipid synthase tri nucleotide
5 ahy-mir5563-3p CM025916.1 10683302 10683437 TACCATAGTTGCCTAATCTATT 30.44 23 -41.4 0.673 AH000849-RA Pollen Ole e 1 allergen and extensin family protein NA
6 ahy-mir-9323 CM025916.1 31325138 31325350 TATCTCGACCGTTTCCGGTGGT 52.18 23 -55.6 0.697 AH002042-RA 0 tri nucleotide
7 ahy-mir-2024e-3p CM025916.1 10877147 10877325 ACTTTCCCAATATTCTTAGGGA 34.79 23 -50 0.656 AH000856-RA Translocon-associated protein (TRAP), alpha subunit NA
8 ahy-mir-2c-5p CM025916.1 26125257 26125330 TTCTGGATCTTTCTTCAGATCT 34.79 23 -49.3 0.656 AH001600-RA Uncharacterised conserved protein (UCP030210) NA
9 ahy-mir-9990-5p CM025916.1 3092807 3092873 CAATTGAGGAATGTGCCAAATC 39.14 23 -55.2 0.656 AH020404-RA emp24/gp25L/p24 family/GOLD family protein NA
10 ahy-mir865-3p CM025916.1 24087941 24088159 AGTGGAATTTGAGGAAAATGAT 30.44 23 -41.4 0.684 AH020275-RA FMN binding tri nucleotide
11 ahy-mir-784 CM025916.1 21050998 21050791 ACAGGTATTGTGATACATTGTA 30.44 23 -43 0.648 AH023253-RA 0 NA
12 ahy-mir3626-3p CM025916.1 29579952 29579737 AGATTCTTCAATTTCACAGCTC 34.79 23 -48 0.633 AH001890-RA phragmoplast orienting kinesin 2 NA
13 ahy-mir393-3p CM025916.1 31770472 31770258 ACTGCAATCTCTTTGCCATTAG 39.14 23 -53.4 0.632 AH000466-RA Protein kinase superfamily protein NA
14 ahy-mir6466-3p CM025916.1 6901392 6901340 ATCATCAAATGTGATCCTGACA 34.79 23 -47.2 0.631 AH000627-RA Rad21/Rec8-like family protein NA
15 ahy-mir7998 CM025916.1 34621538 34621354 GACCATTGATCTACGGCCCAAC 52.18 23 -48.3 0.63 #N/A NA NA
16 ahy-mir9727 CM025916.1 4018444 4018554 AGGAGGTGAAGTTACTCTCTTG 43.48 23 -49.2 0.625 AH006555-RA RNA-binding (RRM/RBD/RNP motifs) family protein NA
17 ahy-mir073 CM025916.1 1347318 1347465 AGATTGAAATTGGACAAGTGGA 34.79 23 -47.6 0.625 AH020102-RA ARM repeat protein interacting with ABF2 NA
18 ahy-mir074 CM025916.1 27035296 27035496 CGCTCAGGTTGCTAAAAGACTA 43.48 23 -56.4 0.624 #N/A NA NA
19 ahy-mir-34-3p CM025916.1 35643018 35643232 AACTGCTGTTTGGGCTACCGGT 52.18 23 -70.5 0.623 AH002460-RA Protein of unknown function (DUF1005) NA
20 ahy-mir077 CM025916.1 23344915 23344700 AACCTGATGCCTCATCAGGGAA 47.83 23 -64.5 0.621 AH003544-RA Duplicated homeodomain-like superfamily protein NA
21 ahy-mir-621 CM025916.1 33849370 33849155 ACAAAACTGTTGCTAGCCCTAA 39.14 23 -53.5 0.621 AH016305-RA SET domain protein 14 NA
22 ahy-mir-1988a-5p CM025916.1 3122657 3122585 AGTAGATGGTTTGACGTTGTAC 39.14 23 -52.5 0.621 AH000335-RA negative regulator of systemic acquired resistance (SNI1) NA
23 ahy-mir100 CM025916.1 8354233 8354033 TTTCTCTAGCTGTTTGTCAATT 30.44 23 -40.6 0.62 AH007317-RA UDP-glucosyl transferase 78D2 NA
24 ahy-mir171d-3p CM025916.1 23367731 23367517 ATCAATATCACTTGGGTGTTGA 34.79 23 -47 0.62 AH002998-RA associated molecule with the SH3 domain of STAM 1 NA
25 ahy-mir11108p-5p CM025916.1 30964744 30964557 AATGCTGAGTTATTTACCTCCA 34.79 23 -46.6 0.615 AH001793-RA Ribosomal protein S25 family protein NA
26 ahy-mir093 CM025916.1 10780917 10780713 TTCTGCTACAGAAGCTTCTATT 34.79 23 -45.9 0.614 AH001157-RA IQ-domain 33 NA
27 ahy-mir087 CM025916.1 757123 757321 TACCTTACTGGTATGCTGGTGT 43.48 23 -46.6 0.612 #N/A NA NA
28 ahy-mir-7880o-3p CM025916.1 3483785 3483571 CGATGTAAATGACTATATCCAG 34.79 23 -45.8 0.612 AH000369-RA Ribosomal protein L24e family protein NA
29 ahy-mir-61 CM025916.1 969950 969774 GATCGCGCCCTTTCACGGTTCT 56.53 23 -48.1 0.612 #N/A NA NA
30 ahy-mir-7552a-2-3p CM025916.1 35301492 35301336 TGATGCTAAGGGAAATCTTCTA 34.79 23 -46.4 0.612 AH008631-RA Nucleic acid-binding proteins superfamily NA
31 ahy-mir089 CM025916.1 3173866 3174060 TGTCGTTAAAACTCGACTAAAT 30.44 23 -36.1 0.611 AH014722-RA cytochrome P450, family 710, subfamily A, polypeptide 1 NA
32 ahy-mir-2c-5p CM025916.1 26125257 26125330 CATCAAATTGTGATACTCTTGC 34.79 23 -45.7 0.611 AH001600-RA timeless family protein NA
33 ahy-mir-9295 CM025916.1 32326467 32326576 CATAATGTACCCACATTGTTTA 30.44 23 -39.9 0.61 AH020166-RA Protein kinase superfamily protein NA
34 ahy-mir-10570 CM025916.1 27362967 27363119 AGCTAATATACGCGGTCAGAAA 39.14 23 -49.7 0.608 AH023740-RA Tetratricopeptide repeat (TPR)-like superfamily protein NA
35 ahy-mir-6-5p CM025916.1 35298923 35298725 TGTGAACTTCTGCTGCAAAATC 39.14 23 -51.2 0.606 AH021681-RA 0 NA
36 ahy-mir-548j CM025916.1 34340114 34339896 ATGGGTTCAAATCTCAATCACC 39.14 23 -50.7 0.603 AH001545-RA early nodulin-like protein 1 NA
37 ahy-mir776 CM025917.1 7207163 7206976 AAATGTCTTCTATTGCTATTGC 30.44 23 -37.3 0.921 AH002643-RA aldehyde dehydrogenase 5F1 NA
38 ahy-mir-7386k-5p CM025917.1 14832536 14832329 AAAATTGAAGAAGCCATTTCGA 30.44 23 -56.2 0.91 AH020928-RA phosphofructokinase 3 NA
39 ahy-mir-67-3p CM025917.1 13743052 13742929 TTATGGGTTCAAATCTCAATCA 30.44 23 -59 0.902 AH006443-RA S-adenosyl-L-methionine-dependent methyltransferases superfamily protein NA
40 ahy-mir5298a CM025917.1 35743418 35743227 CTTCTTCTTCATCTTCTTCATC 34.79 23 -41.9 0.873 AH008214-RA DNA-binding bromodomain-containing protein NA
41 ahy-mir-959-3p CM025917.1 31146956 31146738 ATTGGATGTTACCAGCGATGAC 43.48 23 -60.8 0.842 AH003851-RA growth-regulating factor 1 NA
42 ahy-mir6209 CM025917.1 11143338 11143190 AGATCAGAAACTCTTGATCAGT 34.79 23 -60.7 0.812 AH001632-RA O-acyltransferase (WSD1-like) family protein NA
43 ahy-mir7711-3p.3 CM025917.1 8910106 8910278 ACATCATTTCTCTTATGATGGT 30.44 23 -44.6 0.81 AH006759-RA ATP-binding cassette A1 NA
44 ahy-mir019 CM025917.1 6523471 6523612 ATGAAATTGCCTCCATCATTAG 34.79 23 -59.6 0.797 AH014824-RA SCAR family protein NA
45 ahy-mir3709b CM025917.1 26496578 26496441 CATCTGAAAAGTTTAAGGCATT 30.44 23 -40.4 0.785 AH017616-RA WRKY DNA-binding protein 72 NA
46 ahy-mir-30a-3p CM025917.1 150550 150335 ATACTGGTTCAGATGATTGCAA 34.79 23 -43.2 0.781 AH008539-RA DHHC-type zinc finger family protein NA
47 ahy-mir-494-5p CM025917.1 36718999 36719217 TGGACAACACGGATCCCTTTAT 43.48 23 -68.2 0.773 AH023394-RA RING/FYVE/PHD zinc finger superfamily protein NA
48 ahy-mir-2d CM025917.1 32533040 32532825 AATTGATGCAACCGCAAAACCT 39.14 23 -38.7 0.767 AH019424-RA NB-ARC domain-containing disease resistance protein NA
49 ahy-mir-11939-3p CM025917.1 36948133 36948289 TAATGAAATTGCTGCTTCATCT 30.44 23 -50.6 0.763 AH004411-RA equilibrative nucleotide transporter 1 NA
50 ahy-mir-1375-5p CM025917.1 38404091 38403984 TATTCCAGTTGGGCTTGTTAGC 43.48 23 -44.4 0.756 AH016945-RA cold regulated gene 27 NA

MFE: Minimum free energy; MFEI: Minimum free energy index;


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