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EqCNVDb: Equine CNV Database

CNV Details

id CNV_id Chromosome Start End Length Type Breed Find CNVR
1 EqCNV1 chr1 32269377 32519068 249,692 Gain Manipuri
10 EqCNV10 chr1 114089217 114193958 104,742 Gain Zanskari
100 EqCNV100 chr1 159129275 159259668 130,394 Gain Zanskari
101 EqCNV101 chr1 159139395 159393840 254,446 Gain Spiti
102 EqCNV102 chr1 159161759 159947560 785,802 Gain Zanskari
103 EqCNV103 chr1 159161759 159213108 51,350 Gain Spiti
104 EqCNV104 chr1 159166538 159909828 743,291 Gain Zanskari
105 EqCNV105 chr1 159185537 159942400 756,864 Gain Spiti
106 EqCNV106 chr1 159242153 160176963 934,811 Gain Kathiawari
107 EqCNV107 chr1 159254878 160176963 922,086 Gain Kathiawari
108 EqCNV108 chr1 159271020 159392072 121,053 Gain Manipuri
109 EqCNV109 chr1 159411281 159531704 120,424 Loss Kathiawari
11 EqCNV11 chr1 114089217 114193958 104,742 Gain Zanskari
110 EqCNV110 chr1 159540560 159929991 389,432 Gain Manipuri
111 EqCNV111 chr1 159540560 159942400 401,841 Gain Spiti
112 EqCNV112 chr1 159561271 159909828 348,558 Gain Manipuri
113 EqCNV113 chr1 159706901 160176963 470,063 Gain Bhutia
114 EqCNV114 chr1 159729898 159808053 78,156 Gain Kathiawari
115 EqCNV115 chr1 159881420 160238161 356,742 Loss Kathiawari
116 EqCNV116 chr1 159942400 160224590 282,191 Loss Zanskari
117 EqCNV117 chr1 159958427 160233250 274,824 Loss Kathiawari
118 EqCNV118 chr1 162480964 162622160 141,197 Loss Spiti
119 EqCNV119 chr1 162618071 162763628 145,558 Gain Zanskari
12 EqCNV12 chr1 114089217 114193958 104,742 Gain Spiti
120 EqCNV120 chr1 162683618 162763628 80,011 Gain Manipuri
121 EqCNV121 chr1 162802667 162814632 11,966 Gain Manipuri
122 EqCNV122 chr1 162802667 162822247 19,581 Gain Manipuri
123 EqCNV123 chr1 162802667 162974688 172,022 Gain Zanskari
124 EqCNV124 chr1 162802667 162822247 19,581 Gain Bhutia
125 EqCNV125 chr1 162802667 162822247 19,581 Gain Bhutia
126 EqCNV126 chr1 162802667 162822247 19,581 Gain Bhutia
127 EqCNV127 chr1 162802667 162974688 172,022 Gain Spiti
128 EqCNV128 chr1 162806310 162976492 170,183 Gain Manipuri
129 EqCNV129 chr1 162806310 162822247 15,938 Gain Manipuri
13 EqCNV13 chr1 114098618 114279366 180,749 Gain Bhutia
130 EqCNV130 chr1 162806310 162927599 121,290 Gain Zanskari
131 EqCNV131 chr1 162806310 162880389 74,080 Gain Bhutia
132 EqCNV132 chr1 162806310 162815661 9,352 Gain Kathiawari
133 EqCNV133 chr1 162806782 162822247 15,466 Gain Zanskari
134 EqCNV134 chr1 162809939 162822247 12,309 Gain Zanskari
135 EqCNV135 chr1 162873840 162936550 62,711 Gain Kathiawari
136 EqCNV136 chr1 162873840 162975291 101,452 Gain Marwari
137 EqCNV137 chr1 162878457 162974688 96,232 Gain Manipuri
138 EqCNV138 chr1 162878457 162956629 78,173 Gain Zanskari
139 EqCNV139 chr1 162878457 162973674 95,218 Gain Zanskari
14 EqCNV14 chr1 114102421 114193958 91,538 Gain Spiti
140 EqCNV140 chr1 162878457 162974688 96,232 Gain Bhutia
141 EqCNV141 chr1 162898018 162944321 46,304 Gain Kathiawari
142 EqCNV142 chr1 162901664 162944321 42,658 Gain Bhutia
143 EqCNV143 chr1 162901664 162927599 25,936 Gain Spiti
144 EqCNV144 chr1 162917151 162974688 57,538 Gain Manipuri
145 EqCNV145 chr1 162917151 162974688 57,538 Gain Bhutia
146 EqCNV146 chr1 162917151 162974688 57,538 Gain Bhutia
147 EqCNV147 chr1 162919678 162974688 55,011 Gain Bhutia
148 EqCNV148 chr1 162924622 162974688 50,067 Gain Manipuri
149 EqCNV149 chr1 165704039 165738263 34,225 Gain Spiti
15 EqCNV15 chr1 114108979 114193958 84,980 Gain Bhutia
150 EqCNV150 chr1 165875505 165878629 3,125 Loss Bhutia
151 EqCNV151 chr2 11619034 11697284 78,251 Loss Manipuri
152 EqCNV152 chr2 11619034 11697284 78,251 Loss Zanskari
153 EqCNV153 chr2 15080303 15317037 236,735 Loss Bhutia
154 EqCNV154 chr2 15082520 15317037 234,518 Loss Spiti
155 EqCNV155 chr2 15089221 15317037 227,817 Loss Bhutia
156 EqCNV156 chr2 15089221 15317037 227,817 Loss Spiti
157 EqCNV157 chr2 15089221 15317037 227,817 Loss Marwari
158 EqCNV158 chr2 15089221 15317037 227,817 Loss Marwari
159 EqCNV159 chr2 15112913 15304239 191,327 Loss Spiti
16 EqCNV16 chr1 114138168 114193958 55,791 Gain Manipuri
160 EqCNV160 chr2 65895919 70797223 4,901,305 Gain Manipuri
161 EqCNV161 chr2 78933156 78937877 4,722 Loss Bhutia
162 EqCNV162 chr2 95921854 95956410 34,557 Gain Spiti
163 EqCNV163 chr2 104702281 104708453 6,173 Loss Zanskari
164 EqCNV164 chr2 108932708 109196234 263,527 Gain Spiti
165 EqCNV165 chr3 7936603 8138879 202,277 Gain Bhutia
166 EqCNV166 chr3 7940994 7985091 44,098 Gain Manipuri
167 EqCNV167 chr3 7940994 7985091 44,098 Gain Spiti
168 EqCNV168 chr3 7953920 8043641 89,722 Loss Zanskari
169 EqCNV169 chr3 8211040 8223758 12,719 Loss Bhutia
17 EqCNV17 chr1 126850493 126933939 83,447 Gain Manipuri
170 EqCNV170 chr3 9018926 9029622 10,697 Loss Kathiawari
171 EqCNV171 chr3 84053419 84059869 6,451 Loss Zanskari
172 EqCNV172 chr3 84053419 84059869 6,451 Loss Bhutia
173 EqCNV173 chr3 84053419 84059869 6,451 Loss Bhutia
174 EqCNV174 chr3 84053419 84059869 6,451 Loss Bhutia
175 EqCNV175 chr3 84053419 84059869 6,451 Loss Spiti
176 EqCNV176 chr3 84053419 84059869 6,451 Loss Marwari
177 EqCNV177 chr3 115895538 115946294 50,757 Gain Bhutia
178 EqCNV178 chr4 8965291 9028637 63,347 Loss Manipuri
179 EqCNV179 chr4 8965291 9028637 63,347 Loss Kathiawari
18 EqCNV18 chr1 126850493 126968192 117,700 Gain Marwari
180 EqCNV180 chr4 8965291 9028637 63,347 Loss Kathiawari
181 EqCNV181 chr4 9121425 9178634 57,210 Gain Spiti
182 EqCNV182 chr4 9121425 9178634 57,210 Loss Kathiawari
183 EqCNV183 chr4 9121425 9196303 74,879 Gain Kathiawari
184 EqCNV184 chr4 9121425 9188593 67,169 Loss Marwari
185 EqCNV185 chr4 9242688 9282103 39,416 Loss Kathiawari
186 EqCNV186 chr4 9288525 9561963 273,439 Loss Manipuri
187 EqCNV187 chr4 9296017 9346059 50,043 Loss Manipuri
188 EqCNV188 chr4 9320850 9561963 241,114 Loss Zanskari
189 EqCNV189 chr4 9346059 9561963 215,905 Loss Spiti
19 EqCNV19 chr1 155349336 155721347 372,012 Loss Manipuri
190 EqCNV190 chr4 9356228 9561963 205,736 Loss Manipuri
191 EqCNV191 chr4 9356228 9561963 205,736 Loss Manipuri
192 EqCNV192 chr4 9356228 9561963 205,736 Loss Zanskari
193 EqCNV193 chr4 9356228 9561963 205,736 Loss Zanskari
194 EqCNV194 chr4 9356228 9564298 208,071 Loss Bhutia
195 EqCNV195 chr4 9356228 9561963 205,736 Loss Bhutia
196 EqCNV196 chr4 9356228 9561963 205,736 Loss Marwari
197 EqCNV197 chr4 9359856 9561963 202,108 Loss Zanskari
198 EqCNV198 chr4 9563673 9743118 179,446 Loss Spiti
199 EqCNV199 chr4 12189604 12202628 13,025 Loss Manipuri
2 EqCNV2 chr1 32269377 32519068 249,692 Gain Zanskari
20 EqCNV20 chr1 155349336 155406640 57,305 Loss Manipuri
200 EqCNV200 chr4 12189604 12202628 13,025 Loss Manipuri
201 EqCNV201 chr4 12189604 12202628 13,025 Loss Manipuri
202 EqCNV202 chr4 12189604 12202628 13,025 Loss Zanskari
203 EqCNV203 chr4 12189604 12202628 13,025 Loss Bhutia
204 EqCNV204 chr4 12189604 12202628 13,025 Loss Bhutia
205 EqCNV205 chr4 12189604 12202628 13,025 Loss Bhutia
206 EqCNV206 chr4 12189604 12202628 13,025 Loss Kathiawari
207 EqCNV207 chr4 12189604 12202628 13,025 Loss Kathiawari
208 EqCNV208 chr4 12189604 12202628 13,025 Loss Kathiawari
209 EqCNV209 chr4 12189604 12202628 13,025 Loss Marwari
21 EqCNV21 chr1 155349336 155657774 308,439 Loss Zanskari
210 EqCNV210 chr4 52463886 52589662 125,777 Gain Spiti
211 EqCNV211 chr4 52483502 52622098 138,597 Gain Zanskari
212 EqCNV212 chr4 96928219 97011232 83,014 Gain Zanskari
213 EqCNV213 chr4 96944598 97011232 66,635 Gain Zanskari
214 EqCNV214 chr4 96944598 97011232 66,635 Gain Kathiawari
215 EqCNV215 chr4 96969741 97016633 46,893 Gain Spiti
216 EqCNV216 chr4 96979979 97016633 36,655 Gain Manipuri
217 EqCNV217 chr4 96979979 97011232 31,254 Gain Spiti
218 EqCNV218 chr4 96979979 97016633 36,655 Gain Kathiawari
219 EqCNV219 chr4 96984856 97011232 26,377 Gain Marwari
22 EqCNV22 chr1 155349336 155648203 298,868 Gain Zanskari
220 EqCNV220 chr4 101999922 102086688 86,767 Gain Marwari
221 EqCNV221 chr4 102139762 102187284 47,523 Gain Kathiawari
222 EqCNV222 chr4 102170567 102187284 16,718 Gain Manipuri
223 EqCNV223 chr4 102170567 102416095 245,529 Gain Manipuri
224 EqCNV224 chr4 102170567 102396680 226,114 Gain Zanskari
225 EqCNV225 chr4 102170567 102187284 16,718 Gain Kathiawari
226 EqCNV226 chr4 102170567 102187284 16,718 Gain Kathiawari
227 EqCNV227 chr4 102170567 102416095 245,529 Gain Marwari
228 EqCNV228 chr4 102170567 102332966 162,400 Gain Marwari
229 EqCNV229 chr4 102171639 102187284 15,646 Gain Kathiawari
23 EqCNV23 chr1 155349336 155723733 374,398 Loss Kathiawari
230 EqCNV230 chr4 102172768 102327045 154,278 Gain Spiti
231 EqCNV231 chr5 14202488 14255539 53,052 Gain Spiti
232 EqCNV232 chr5 16231266 16342823 111,558 Gain Spiti
233 EqCNV233 chr5 16707471 16903106 195,636 Gain Zanskari
234 EqCNV234 chr5 30319552 30390706 71,155 Gain Manipuri
235 EqCNV235 chr5 30319552 30390184 70,633 Gain Manipuri
236 EqCNV236 chr5 30319552 30390706 71,155 Gain Zanskari
237 EqCNV237 chr5 30319552 30390706 71,155 Gain Bhutia
238 EqCNV238 chr5 31073457 31202328 128,872 Gain Manipuri
239 EqCNV239 chr5 34401010 34440370 39,361 Gain Bhutia
24 EqCNV24 chr1 155353522 155554305 200,784 Loss Bhutia
240 EqCNV240 chr5 35148513 35155676 7,164 Loss Manipuri
241 EqCNV241 chr5 37803104 37975137 172,034 Loss Kathiawari
242 EqCNV242 chr5 41015098 41094418 79,321 Gain Bhutia
243 EqCNV243 chr5 74977077 74984404 7,328 Loss Manipuri
244 EqCNV244 chr5 74977077 74984404 7,328 Loss Zanskari
245 EqCNV245 chr5 74977077 74984404 7,328 Loss Bhutia
246 EqCNV246 chr5 74977077 74984404 7,328 Loss Bhutia
247 EqCNV247 chr5 74977077 74984404 7,328 Loss Bhutia
248 EqCNV248 chr5 74977077 74984404 7,328 Loss Spiti
249 EqCNV249 chr6 21585591 21726047 140,457 Gain Manipuri
25 EqCNV25 chr1 155353522 155549358 195,837 Loss Spiti
250 EqCNV250 chr6 21585591 21733205 147,615 Gain Kathiawari
251 EqCNV251 chr6 42007368 42021857 14,490 Gain Kathiawari
252 EqCNV252 chr6 56235315 56241196 5,882 Loss Zanskari
253 EqCNV253 chr6 56235315 56241196 5,882 Loss Zanskari
254 EqCNV254 chr6 56235315 56241196 5,882 Loss Kathiawari
255 EqCNV255 chr6 66068053 66100355 32,303 Loss Bhutia
256 EqCNV256 chr6 69558706 69586918 28,213 Gain Zanskari
257 EqCNV257 chr6 69558706 69585990 27,285 Gain Kathiawari
258 EqCNV258 chr6 71910986 71955209 44,224 Loss Bhutia
259 EqCNV259 chr6 72012114 72548957 536,844 Loss Manipuri
26 EqCNV26 chr1 155353522 155723733 370,212 Loss Kathiawari
260 EqCNV260 chr6 72012114 72518756 506,643 Gain Bhutia
261 EqCNV261 chr6 72012114 72392271 380,158 Loss Spiti
262 EqCNV262 chr6 72012461 72535533 523,073 Loss Bhutia
263 EqCNV263 chr6 72012461 72548957 536,497 Loss Bhutia
264 EqCNV264 chr6 72012461 72548957 536,497 Loss Spiti
265 EqCNV265 chr6 72012461 72548957 536,497 Loss Kathiawari
266 EqCNV266 chr6 72012461 72535533 523,073 Loss Marwari
267 EqCNV267 chr6 72040348 72535533 495,186 Loss Zanskari
268 EqCNV268 chr6 72040348 72535533 495,186 Loss Spiti
269 EqCNV269 chr6 72047583 72329251 281,669 Loss Kathiawari
27 EqCNV27 chr1 155353522 155555608 202,087 Loss Kathiawari
270 EqCNV270 chr6 72065463 72414640 349,178 Loss Bhutia
271 EqCNV271 chr6 72157681 72554607 396,927 Loss Manipuri
272 EqCNV272 chr6 72254929 72540519 285,591 Gain Spiti
273 EqCNV273 chr6 72824513 73417216 592,704 Loss Marwari
274 EqCNV274 chr6 72826374 73416876 590,503 Loss Bhutia
275 EqCNV275 chr6 72826374 73416876 590,503 Loss Bhutia
276 EqCNV276 chr6 73024692 73416876 392,185 Loss Bhutia
277 EqCNV277 chr6 73024692 73417216 392,525 Loss Spiti
278 EqCNV278 chr6 73027036 73417216 390,181 Loss Manipuri
279 EqCNV279 chr6 73157168 73224534 67,367 Loss Bhutia
28 EqCNV28 chr1 155353522 155721899 368,378 Loss Kathiawari
280 EqCNV280 chr6 73157168 73224534 67,367 Loss Kathiawari
281 EqCNV281 chr6 73161586 73224534 62,949 Loss Kathiawari
282 EqCNV282 chr6 73161586 73224534 62,949 Loss Kathiawari
283 EqCNV283 chr6 73161586 73224534 62,949 Loss Marwari
284 EqCNV284 chr6 73378275 73388386 10,112 Loss Manipuri
285 EqCNV285 chr6 73378275 73388386 10,112 Loss Spiti
286 EqCNV286 chr6 74297617 74329724 32,108 Gain Bhutia
287 EqCNV287 chr6 74359941 74433600 73,660 Gain Manipuri
288 EqCNV288 chr6 74361406 74451036 89,631 Gain Bhutia
289 EqCNV289 chr6 74363606 74431060 67,455 Gain Bhutia
29 EqCNV29 chr1 155359360 155549358 189,999 Loss Kathiawari
290 EqCNV290 chr6 77307109 77619564 312,456 Loss Zanskari
291 EqCNV291 chr6 77309032 77624610 315,579 Loss Zanskari
292 EqCNV292 chr6 77309032 77624610 315,579 Loss Bhutia
293 EqCNV293 chr6 77309032 77619564 310,533 Loss Bhutia
294 EqCNV294 chr6 77309032 77619564 310,533 Loss Bhutia
295 EqCNV295 chr6 77309032 77624610 315,579 Loss Bhutia
296 EqCNV296 chr6 77309032 77619564 310,533 Loss Marwari
297 EqCNV297 chr6 77309032 77624610 315,579 Loss Marwari
298 EqCNV298 chr7 4191299 4245640 54,342 Gain Spiti
299 EqCNV299 chr7 31617684 31754437 136,754 Gain Zanskari
3 EqCNV3 chr1 32269377 32519068 249,692 Gain Bhutia
30 EqCNV30 chr1 155360863 155732506 371,644 Loss Spiti
300 EqCNV300 chr7 52052526 52109003 56,478 Gain Zanskari
301 EqCNV301 chr7 52607056 52632704 25,649 Gain Manipuri
302 EqCNV302 chr7 52607056 52659892 52,837 Gain Marwari
303 EqCNV303 chr7 52608335 52661946 53,612 Gain Bhutia
304 EqCNV304 chr7 56448554 56532964 84,411 Gain Manipuri
305 EqCNV305 chr7 56666038 56911813 245,776 Gain Kathiawari
306 EqCNV306 chr7 72512349 72529992 17,644 Gain Kathiawari
307 EqCNV307 chr7 72521679 72529992 8,314 Gain Zanskari
308 EqCNV308 chr7 73069776 73505893 436,118 Loss Manipuri
309 EqCNV309 chr7 73069776 73349521 279,746 Loss Zanskari
31 EqCNV31 chr1 155369855 155657774 287,920 Loss Zanskari
310 EqCNV310 chr7 73071555 73340668 269,114 Loss Bhutia
311 EqCNV311 chr7 73071555 73349521 277,967 Loss Spiti
312 EqCNV312 chr7 73349521 73630000 280,480 Loss Bhutia
313 EqCNV313 chr7 73444668 73707140 262,473 Loss Zanskari
314 EqCNV314 chr7 73444668 73630000 185,333 Loss Zanskari
315 EqCNV315 chr7 73444668 73630000 185,333 Loss Bhutia
316 EqCNV316 chr7 73444668 73630000 185,333 Loss Spiti
317 EqCNV317 chr7 76142752 76164499 21,748 Loss Kathiawari
318 EqCNV318 chr8 1605702 1981157 375,456 Loss Kathiawari
319 EqCNV319 chr8 1668535 1872989 204,455 Loss Manipuri
32 EqCNV32 chr1 155369855 155488454 118,600 Gain Zanskari
320 EqCNV320 chr8 1776896 1912451 135,556 Loss Manipuri
321 EqCNV321 chr8 1776896 1912451 135,556 Loss Bhutia
322 EqCNV322 chr8 1776896 1954957 178,062 Loss Kathiawari
323 EqCNV323 chr8 1776896 1917093 140,198 Loss Kathiawari
324 EqCNV324 chr8 1776896 1902357 125,462 Loss Kathiawari
325 EqCNV325 chr8 2015400 2143066 127,667 Gain Bhutia
326 EqCNV326 chr8 2259005 2421313 162,309 Gain Manipuri
327 EqCNV327 chr8 2263192 2402367 139,176 Gain Kathiawari
328 EqCNV328 chr8 2305237 2448440 143,204 Loss Marwari
329 EqCNV329 chr8 2846196 2930388 84,193 Loss Zanskari
33 EqCNV33 chr1 155377713 155549358 171,646 Loss Manipuri
330 EqCNV330 chr8 3617490 3783874 166,385 Gain Zanskari
331 EqCNV331 chr8 3617490 3834742 217,253 Gain Bhutia
332 EqCNV332 chr8 3620558 3656927 36,370 Gain Manipuri
333 EqCNV333 chr8 3620558 3737311 116,754 Gain Zanskari
334 EqCNV334 chr8 3620558 3684396 63,839 Gain Bhutia
335 EqCNV335 chr8 3623447 3656927 33,481 Gain Spiti
336 EqCNV336 chr8 3722639 3784324 61,686 Gain Manipuri
337 EqCNV337 chr8 3727366 3801414 74,049 Gain Kathiawari
338 EqCNV338 chr8 3801414 3883173 81,760 Gain Marwari
339 EqCNV339 chr8 3818659 3883173 64,515 Gain Bhutia
34 EqCNV34 chr1 155377713 155732506 354,794 Loss Bhutia
340 EqCNV340 chr8 3818659 3834742 16,084 Gain Kathiawari
341 EqCNV341 chr8 3818659 3934227 115,569 Gain Kathiawari
342 EqCNV342 chr8 4250126 4443687 193,562 Loss Manipuri
343 EqCNV343 chr8 4250126 4434053 183,928 Loss Manipuri
344 EqCNV344 chr8 4250126 4443687 193,562 Loss Kathiawari
345 EqCNV345 chr8 4250126 4536717 286,592 Loss Kathiawari
346 EqCNV346 chr8 4251195 4536717 285,523 Loss Manipuri
347 EqCNV347 chr8 4251195 4443687 192,493 Loss Zanskari
348 EqCNV348 chr8 4251195 4456686 205,492 Loss Bhutia
349 EqCNV349 chr8 4251195 4434053 182,859 Loss Bhutia
35 EqCNV35 chr1 155377713 155732506 354,794 Gain Bhutia
350 EqCNV350 chr8 4251195 4474783 223,589 Loss Spiti
351 EqCNV351 chr8 4374388 4553254 178,867 Gain Manipuri
352 EqCNV352 chr8 4381245 4535223 153,979 Gain Spiti
353 EqCNV353 chr8 4382785 4536717 153,933 Loss Manipuri
354 EqCNV354 chr8 4382785 4535223 152,439 Gain Zanskari
355 EqCNV355 chr8 4440333 4636875 196,543 Loss Zanskari
356 EqCNV356 chr8 4440333 4636875 196,543 Loss Bhutia
357 EqCNV357 chr8 4440333 4636875 196,543 Loss Spiti
358 EqCNV358 chr8 4440333 4636875 196,543 Loss Marwari
359 EqCNV359 chr8 4457611 4539344 81,734 Loss Manipuri
36 EqCNV36 chr1 155385968 155514155 128,188 Gain Zanskari
360 EqCNV360 chr8 4457611 4536717 79,107 Loss Bhutia
361 EqCNV361 chr8 4805105 4943565 138,461 Gain Zanskari
362 EqCNV362 chr8 4805105 4925802 120,698 Gain Bhutia
363 EqCNV363 chr8 4825031 4934854 109,824 Gain Bhutia
364 EqCNV364 chr8 13023021 13040752 17,732 Gain Marwari
365 EqCNV365 chr8 30125844 30482950 357,107 Gain Bhutia
366 EqCNV366 chr9 3497461 3503214 5,754 Loss Manipuri
367 EqCNV367 chr9 57340332 58103663 763,332 Loss Bhutia
368 EqCNV368 chr9 81711920 81721381 9,462 Gain Zanskari
369 EqCNV369 chr9 81715074 81721381 6,308 Gain Bhutia
37 EqCNV37 chr1 155385968 155424661 38,694 Gain Bhutia
370 EqCNV370 chr10 11993698 12059396 65,699 Gain Manipuri
371 EqCNV371 chr10 11997028 12066458 69,431 Gain Kathiawari
372 EqCNV372 chr10 11997316 12059396 62,081 Gain Spiti
373 EqCNV373 chr10 12001330 12056397 55,068 Gain Kathiawari
374 EqCNV374 chr10 12017097 12059396 42,300 Gain Zanskari
375 EqCNV375 chr10 12017097 12028016 10,920 Gain Bhutia
376 EqCNV376 chr10 30555518 30858459 302,942 Gain Bhutia
377 EqCNV377 chr10 48634880 48670739 35,860 Gain Manipuri
378 EqCNV378 chr10 77796390 77960252 163,863 Gain Manipuri
379 EqCNV379 chr10 77808469 77945737 137,269 Loss Manipuri
38 EqCNV38 chr1 155394476 155685550 291,075 Gain Bhutia
380 EqCNV380 chr10 77808469 77955834 147,366 Loss Bhutia
381 EqCNV381 chr10 77808469 77955834 147,366 Loss Spiti
382 EqCNV382 chr10 77814178 77955834 141,657 Gain Kathiawari
383 EqCNV383 chr10 77821663 77960252 138,590 Gain Kathiawari
384 EqCNV384 chr11 21821699 21844383 22,685 Gain Bhutia
385 EqCNV385 chr11 53664508 53701020 36,513 Gain Spiti
386 EqCNV386 chr12 4049131 4057962 8,832 Loss Manipuri
387 EqCNV387 chr12 4054196 4057962 3,767 Loss Manipuri
388 EqCNV388 chr12 4054196 4057962 3,767 Loss Spiti
389 EqCNV389 chr12 12321830 13578099 1,256,270 Gain Manipuri
39 EqCNV39 chr1 155422187 155685550 263,364 Loss Manipuri
390 EqCNV390 chr12 12321830 12451008 129,179 Gain Manipuri
391 EqCNV391 chr12 12321830 12477228 155,399 Gain Spiti
392 EqCNV392 chr12 12321830 12394338 72,509 Gain Kathiawari
393 EqCNV393 chr12 12323973 12396775 72,803 Gain Manipuri
394 EqCNV394 chr12 12323973 12392988 69,016 Gain Zanskari
395 EqCNV395 chr12 12323973 12406745 82,773 Gain Bhutia
396 EqCNV396 chr12 12323973 13137015 813,043 Gain Bhutia
397 EqCNV397 chr12 12330937 12477228 146,292 Gain Manipuri
398 EqCNV398 chr12 12330937 12406745 75,809 Gain Zanskari
399 EqCNV399 chr12 12330937 12406745 75,809 Gain Bhutia
4 EqCNV4 chr1 40928477 40933883 5,407 Loss Spiti
40 EqCNV40 chr1 155423709 155545055 121,347 Loss Manipuri
400 EqCNV400 chr12 12330937 12406745 75,809 Gain Spiti
401 EqCNV401 chr12 12330937 12406745 75,809 Gain Spiti
402 EqCNV402 chr12 12330937 12406745 75,809 Gain Kathiawari
403 EqCNV403 chr12 12332813 12923559 590,747 Gain Manipuri
404 EqCNV404 chr12 12332813 12542338 209,526 Gain Zanskari
405 EqCNV405 chr12 12335425 12406745 71,321 Gain Spiti
406 EqCNV406 chr12 12346938 12406745 59,808 Gain Manipuri
407 EqCNV407 chr12 12346938 13330756 983,819 Gain Bhutia
408 EqCNV408 chr12 12346938 12392988 46,051 Gain Kathiawari
409 EqCNV409 chr12 12350691 12532746 182,056 Gain Manipuri
41 EqCNV41 chr1 155448395 155712692 264,298 Gain Manipuri
410 EqCNV410 chr12 12357366 12394338 36,973 Gain Spiti
411 EqCNV411 chr12 12387909 13575217 1,187,309 Gain Bhutia
412 EqCNV412 chr12 12436058 13537551 1,101,494 Gain Manipuri
413 EqCNV413 chr12 12475008 13111552 636,545 Gain Marwari
414 EqCNV414 chr12 12490630 14441332 1,950,703 Loss Zanskari
415 EqCNV415 chr12 12490630 13069502 578,873 Gain Zanskari
416 EqCNV416 chr12 12490630 12747279 256,650 Gain Bhutia
417 EqCNV417 chr12 12490630 12807300 316,671 Gain Bhutia
418 EqCNV418 chr12 12490630 13069502 578,873 Loss Spiti
419 EqCNV419 chr12 12490630 14441332 1,950,703 Loss Kathiawari
42 EqCNV42 chr1 155525769 155648203 122,435 Gain Zanskari
420 EqCNV420 chr12 12490630 14441332 1,950,703 Loss Marwari
421 EqCNV421 chr12 12501419 12676526 175,108 Gain Kathiawari
422 EqCNV422 chr12 12501419 12638616 137,198 Gain Marwari
423 EqCNV423 chr12 12510462 12589520 79,059 Gain Zanskari
424 EqCNV424 chr12 12532746 12923559 390,814 Gain Spiti
425 EqCNV425 chr12 12564586 12961418 396,833 Gain Spiti
426 EqCNV426 chr12 12628967 13401991 773,025 Gain Bhutia
427 EqCNV427 chr12 12727966 14882782 2,154,817 Gain Manipuri
428 EqCNV428 chr12 12768141 13413994 645,854 Gain Marwari
429 EqCNV429 chr12 12805171 13401991 596,821 Loss Manipuri
43 EqCNV43 chr1 155545055 155691904 146,850 Gain Spiti
430 EqCNV430 chr12 12805171 12829176 24,006 Gain Bhutia
431 EqCNV431 chr12 12805171 13202617 397,447 Gain Bhutia
432 EqCNV432 chr12 12818994 12916192 97,199 Gain Marwari
433 EqCNV433 chr12 12854963 13267091 412,129 Gain Manipuri
434 EqCNV434 chr12 12880866 13538745 657,880 Gain Bhutia
435 EqCNV435 chr12 12964110 13698720 734,611 Gain Manipuri
436 EqCNV436 chr12 12984936 13981698 996,763 Gain Marwari
437 EqCNV437 chr12 13022695 13158970 136,276 Gain Bhutia
438 EqCNV438 chr12 13030759 13558035 527,277 Gain Spiti
439 EqCNV439 chr12 13168480 14437487 1,269,008 Loss Spiti
44 EqCNV44 chr1 155546564 155695980 149,417 Gain Bhutia
440 EqCNV440 chr12 13190463 14481073 1,290,611 Gain Zanskari
441 EqCNV441 chr12 13264433 13933179 668,747 Gain Spiti
442 EqCNV442 chr12 13356737 13451882 95,146 Gain Bhutia
443 EqCNV443 chr12 13363063 13445095 82,033 Gain Kathiawari
444 EqCNV444 chr12 13413994 13687171 273,178 Gain Zanskari
445 EqCNV445 chr12 13413994 14937463 1,523,470 Gain Bhutia
446 EqCNV446 chr12 13432624 14185737 753,114 Gain Marwari
447 EqCNV447 chr12 13436910 13538745 101,836 Gain Bhutia
448 EqCNV448 chr12 13443647 13981698 538,052 Gain Kathiawari
449 EqCNV449 chr12 13499145 13523651 24,507 Gain Spiti
45 EqCNV45 chr1 155554173 155695980 141,808 Gain Marwari
450 EqCNV450 chr12 13512131 13698720 186,590 Gain Marwari
451 EqCNV451 chr12 13516211 14378081 861,871 Gain Bhutia
452 EqCNV452 chr12 13537374 13636074 98,701 Gain Kathiawari
453 EqCNV453 chr12 13556664 13761887 205,224 Gain Bhutia
454 EqCNV454 chr12 13591232 14872581 1,281,350 Gain Manipuri
455 EqCNV455 chr12 13596226 14937463 1,341,238 Gain Bhutia
456 EqCNV456 chr12 13603343 13657831 54,489 Gain Manipuri
457 EqCNV457 chr12 13613398 14185737 572,340 Gain Manipuri
458 EqCNV458 chr12 13660733 13879697 218,965 Gain Spiti
459 EqCNV459 chr12 13664854 14604821 939,968 Gain Bhutia
46 EqCNV46 chr1 155577943 155723733 145,791 Loss Kathiawari
460 EqCNV460 chr12 13670832 14882782 1,211,951 Loss Manipuri
461 EqCNV461 chr12 13670832 14441332 770,501 Loss Manipuri
462 EqCNV462 chr12 13670832 14879319 1,208,488 Loss Bhutia
463 EqCNV463 chr12 13711377 13890054 178,678 Gain Bhutia
464 EqCNV464 chr12 13727437 13902393 174,957 Gain Kathiawari
465 EqCNV465 chr12 13757133 14185737 428,605 Gain Manipuri
466 EqCNV466 chr12 13807519 14350435 542,917 Loss Zanskari
467 EqCNV467 chr12 13952623 14441332 488,710 Gain Zanskari
468 EqCNV468 chr12 13977480 14441332 463,853 Gain Bhutia
469 EqCNV469 chr12 13977480 14937463 959,984 Gain Bhutia
47 EqCNV47 chr1 155593712 155656686 62,975 Loss Kathiawari
470 EqCNV470 chr12 14039536 14481073 441,538 Gain Marwari
471 EqCNV471 chr12 14162745 14869851 707,107 Loss Kathiawari
472 EqCNV472 chr12 14175496 14376157 200,662 Gain Spiti
473 EqCNV473 chr12 14272881 14399976 127,096 Gain Kathiawari
474 EqCNV474 chr12 14312561 14882782 570,222 Loss Kathiawari
475 EqCNV475 chr12 14327029 14437487 110,459 Gain Bhutia
476 EqCNV476 chr12 14387563 14399976 12,414 Gain Bhutia
477 EqCNV477 chr12 14387563 14399976 12,414 Gain Bhutia
478 EqCNV478 chr12 14399519 14882782 483,264 Gain Bhutia
479 EqCNV479 chr12 14416557 14670414 253,858 Gain Spiti
48 EqCNV48 chr1 155765945 156672409 906,465 Loss Kathiawari
480 EqCNV480 chr12 14436805 14805421 368,617 Gain Manipuri
481 EqCNV481 chr12 14437487 14869851 432,365 Gain Manipuri
482 EqCNV482 chr12 14453761 14882782 429,022 Gain Spiti
483 EqCNV483 chr12 14453761 14882782 429,022 Gain Kathiawari
484 EqCNV484 chr12 14453761 14882782 429,022 Loss Marwari
485 EqCNV485 chr12 14453761 14882782 429,022 Gain Marwari
486 EqCNV486 chr12 14468453 14497457 29,005 Gain Zanskari
487 EqCNV487 chr12 14473574 14879319 405,746 Gain Zanskari
488 EqCNV488 chr12 14497457 14872581 375,125 Gain Manipuri
489 EqCNV489 chr12 14497457 14642081 144,625 Gain Bhutia
49 EqCNV49 chr1 155765945 156679390 913,446 Loss Marwari
490 EqCNV490 chr12 14536312 14620366 84,055 Gain Spiti
491 EqCNV491 chr12 14546350 14860779 314,430 Gain Zanskari
492 EqCNV492 chr12 14546350 14937463 391,114 Gain Bhutia
493 EqCNV493 chr12 14574284 14812816 238,533 Gain Marwari
494 EqCNV494 chr12 14622749 14937463 314,715 Gain Bhutia
495 EqCNV495 chr12 14753378 14803907 50,530 Gain Zanskari
496 EqCNV496 chr12 14753378 14872581 119,204 Gain Spiti
497 EqCNV497 chr12 22396755 22659554 262,800 Gain Zanskari
498 EqCNV498 chr12 22396755 22669012 272,258 Gain Kathiawari
499 EqCNV499 chr12 22402123 22601197 199,075 Gain Marwari
5 EqCNV5 chr1 40928477 40933883 5,407 Loss Marwari
50 EqCNV50 chr1 155767281 156679390 912,110 Loss Zanskari
500 EqCNV500 chr13 679461 719140 39,680 Gain Manipuri
501 EqCNV501 chr13 679461 712338 32,878 Gain Bhutia
502 EqCNV502 chr13 679461 712338 32,878 Gain Spiti
503 EqCNV503 chr13 22546556 22635163 88,608 Gain Bhutia
504 EqCNV504 chr13 22559018 22635163 76,146 Gain Manipuri
505 EqCNV505 chr13 22566143 22665035 98,893 Gain Marwari
506 EqCNV506 chr14 3857388 3891099 33,712 Gain Manipuri
507 EqCNV507 chr14 3857388 3891099 33,712 Gain Bhutia
508 EqCNV508 chr14 3857388 3891099 33,712 Gain Bhutia
509 EqCNV509 chr14 3857388 3891099 33,712 Gain Spiti
51 EqCNV51 chr1 156115896 156523789 407,894 Loss Zanskari
510 EqCNV510 chr14 3857388 3891099 33,712 Gain Marwari
511 EqCNV511 chr14 3867523 3891099 23,577 Gain Manipuri
512 EqCNV512 chr14 3867523 3891099 23,577 Gain Kathiawari
513 EqCNV513 chr14 3867523 3891099 23,577 Gain Kathiawari
514 EqCNV514 chr14 3880307 3891099 10,793 Gain Zanskari
515 EqCNV515 chr14 16626688 16944597 317,910 Gain Zanskari
516 EqCNV516 chr14 16633943 16944597 310,655 Gain Zanskari
517 EqCNV517 chr14 16633943 16944597 310,655 Gain Spiti
518 EqCNV518 chr14 16633943 16944597 310,655 Gain Marwari
519 EqCNV519 chr14 16651624 16920952 269,329 Gain Kathiawari
52 EqCNV52 chr1 156121619 156523789 402,171 Loss Zanskari
520 EqCNV520 chr14 16671923 16926320 254,398 Gain Manipuri
521 EqCNV521 chr14 29467418 29500013 32,596 Gain Marwari
522 EqCNV522 chr14 53249021 53320812 71,792 Gain Zanskari
523 EqCNV523 chr14 53249021 53320812 71,792 Gain Bhutia
524 EqCNV524 chr15 12676009 12705284 29,276 Loss Manipuri
525 EqCNV525 chr15 12676009 12744952 68,944 Loss Manipuri
526 EqCNV526 chr15 12676009 12744952 68,944 Loss Zanskari
527 EqCNV527 chr15 12676009 12744952 68,944 Loss Spiti
528 EqCNV528 chr15 16742135 16763107 20,973 Gain Marwari
529 EqCNV529 chr15 19197540 19201029 3,490 Loss Manipuri
53 EqCNV53 chr1 156121619 156519125 397,507 Loss Bhutia
530 EqCNV530 chr15 46686281 46805369 119,089 Gain Kathiawari
531 EqCNV531 chr15 67262250 67547771 285,522 Gain Kathiawari
532 EqCNV532 chr15 67285700 67564587 278,888 Gain Bhutia
533 EqCNV533 chr15 67285700 67564587 278,888 Gain Bhutia
534 EqCNV534 chr15 67285700 67560434 274,735 Gain Kathiawari
535 EqCNV535 chr15 67305674 67564587 258,914 Gain Spiti
536 EqCNV536 chr16 2760388 2826983 66,596 Gain Marwari
537 EqCNV537 chr16 2789909 2844647 54,739 Gain Spiti
538 EqCNV538 chr16 27934797 28061529 126,733 Gain Zanskari
539 EqCNV539 chr16 27942364 28061529 119,166 Gain Bhutia
54 EqCNV54 chr1 156121619 156523789 402,171 Loss Bhutia
540 EqCNV540 chr16 27942364 28061529 119,166 Gain Bhutia
541 EqCNV541 chr16 57352131 57415084 62,954 Gain Zanskari
542 EqCNV542 chr16 84730202 84829522 99,321 Gain Zanskari
543 EqCNV543 chr16 84735746 84833183 97,438 Gain Zanskari
544 EqCNV544 chr16 84735746 84821339 85,594 Gain Marwari
545 EqCNV545 chr17 42116176 43867258 1,751,083 Gain Kathiawari
546 EqCNV546 chr17 80646006 80699531 53,526 Gain Bhutia
547 EqCNV547 chr17 80646006 80725815 79,810 Gain Bhutia
548 EqCNV548 chr18 3253779 3343701 89,923 Gain Bhutia
549 EqCNV549 chr18 9410414 9690610 280,197 Gain Spiti
55 EqCNV55 chr1 156125530 156523789 398,260 Loss Zanskari
550 EqCNV550 chr18 9591004 9608234 17,231 Gain Bhutia
551 EqCNV551 chr18 9805525 9830923 25,399 Gain Bhutia
552 EqCNV552 chr18 9820696 10112964 292,269 Gain Spiti
553 EqCNV553 chr18 9820696 9974758 154,063 Gain Spiti
554 EqCNV554 chr18 13099142 13102430 3,289 Gain Bhutia
555 EqCNV555 chr18 13664437 13745167 80,731 Gain Kathiawari
556 EqCNV556 chr18 13668847 13766139 97,293 Gain Manipuri
557 EqCNV557 chr18 13727960 13798499 70,540 Gain Spiti
558 EqCNV558 chr18 13729648 13752236 22,589 Gain Zanskari
559 EqCNV559 chr18 13729648 13750292 20,645 Gain Kathiawari
56 EqCNV56 chr1 156125530 156523789 398,260 Loss Zanskari
560 EqCNV560 chr18 13742608 13764605 21,998 Gain Zanskari
561 EqCNV561 chr18 13750292 13798499 48,208 Gain Spiti
562 EqCNV562 chr18 24548392 24565412 17,021 Loss Bhutia
563 EqCNV563 chr19 1274351 1407367 133,017 Gain Manipuri
564 EqCNV564 chr19 1274351 1443278 168,928 Gain Bhutia
565 EqCNV565 chr19 1274351 1407367 133,017 Gain Kathiawari
566 EqCNV566 chr19 1295851 1417401 121,551 Gain Manipuri
567 EqCNV567 chr19 1295851 1441429 145,579 Gain Manipuri
568 EqCNV568 chr19 6360549 6829275 468,727 Gain Zanskari
569 EqCNV569 chr19 6396622 6793779 397,158 Gain Spiti
57 EqCNV57 chr1 156436146 156870455 434,310 Loss Zanskari
570 EqCNV570 chr19 6396622 6829275 432,654 Gain Kathiawari
571 EqCNV571 chr19 30277265 30282595 5,331 Loss Kathiawari
572 EqCNV572 chr19 36802968 36833938 30,971 Gain Manipuri
573 EqCNV573 chr19 42931575 43177679 246,105 Loss Spiti
574 EqCNV574 chr19 42961295 43177679 216,385 Loss Kathiawari
575 EqCNV575 chr20 24272835 24505799 232,965 Gain Bhutia
576 EqCNV576 chr20 24282198 24454619 172,422 Gain Spiti
577 EqCNV577 chr20 24296409 24528102 231,694 Gain Marwari
578 EqCNV578 chr20 24369524 24454619 85,096 Loss Bhutia
579 EqCNV579 chr20 24421652 24528102 106,451 Gain Kathiawari
58 EqCNV58 chr1 156436146 156874227 438,082 Loss Zanskari
580 EqCNV580 chr20 26390640 26483186 92,547 Gain Manipuri
581 EqCNV581 chr20 26390640 26528106 137,467 Gain Zanskari
582 EqCNV582 chr20 26390640 26520692 130,053 Gain Zanskari
583 EqCNV583 chr20 26390640 26498430 107,791 Gain Bhutia
584 EqCNV584 chr20 26390640 26523880 133,241 Gain Kathiawari
585 EqCNV585 chr20 26401740 26523880 122,141 Gain Bhutia
586 EqCNV586 chr20 26401740 26523880 122,141 Gain Kathiawari
587 EqCNV587 chr20 26414316 26462145 47,830 Gain Zanskari
588 EqCNV588 chr20 26416053 26523880 107,828 Gain Zanskari
589 EqCNV589 chr20 26423516 26509114 85,599 Gain Zanskari
59 EqCNV59 chr1 156436146 156874227 438,082 Loss Zanskari
590 EqCNV590 chr20 26423516 26484625 61,110 Gain Zanskari
591 EqCNV591 chr20 26423516 26523880 100,365 Gain Bhutia
592 EqCNV592 chr20 26434542 26506287 71,746 Gain Kathiawari
593 EqCNV593 chr20 26441024 26531248 90,225 Gain Marwari
594 EqCNV594 chr20 26470770 26520692 49,923 Gain Manipuri
595 EqCNV595 chr20 26483186 26489732 6,547 Gain Manipuri
596 EqCNV596 chr20 26487289 26513225 25,937 Gain Zanskari
597 EqCNV597 chr20 26494616 26523880 29,265 Gain Manipuri
598 EqCNV598 chr20 28354162 28582451 228,290 Loss Zanskari
599 EqCNV599 chr20 28354162 28582451 228,290 Loss Zanskari
6 EqCNV6 chr1 109435547 109543046 107,500 Loss Zanskari
60 EqCNV60 chr1 156436146 156661578 225,433 Loss Bhutia
600 EqCNV600 chr20 28354162 28582451 228,290 Loss Spiti
601 EqCNV601 chr20 28354162 28582451 228,290 Loss Spiti
602 EqCNV602 chr20 29007133 29041402 34,270 Gain Manipuri
603 EqCNV603 chr20 29047823 29083163 35,341 Gain Zanskari
604 EqCNV604 chr20 29098046 29118218 20,173 Gain Kathiawari
605 EqCNV605 chr20 29099542 29122429 22,888 Gain Manipuri
606 EqCNV606 chr20 29099542 29122429 22,888 Gain Zanskari
607 EqCNV607 chr20 29099542 29122429 22,888 Gain Zanskari
608 EqCNV608 chr20 29099542 29118218 18,677 Gain Spiti
609 EqCNV609 chr20 29111605 29122429 10,825 Gain Manipuri
61 EqCNV61 chr1 156436146 156874227 438,082 Loss Bhutia
610 EqCNV610 chr20 29111605 29122429 10,825 Loss Zanskari
611 EqCNV611 chr20 29111605 29122429 10,825 Gain Bhutia
612 EqCNV612 chr20 29111605 29122429 10,825 Gain Spiti
613 EqCNV613 chr20 29112480 29118218 5,739 Gain Manipuri
614 EqCNV614 chr20 29112480 29119348 6,869 Loss Bhutia
615 EqCNV615 chr20 29114801 29122429 7,629 Gain Zanskari
616 EqCNV616 chr20 29114801 29122429 7,629 Gain Bhutia
617 EqCNV617 chr20 29217367 29223361 5,995 Loss Spiti
618 EqCNV618 chr20 29319450 29340259 20,810 Loss Zanskari
619 EqCNV619 chr20 29319450 29328324 8,875 Loss Bhutia
62 EqCNV62 chr1 156436146 156874227 438,082 Loss Bhutia
620 EqCNV620 chr20 30327372 30343576 16,205 Loss Kathiawari
621 EqCNV621 chr20 30328259 30343442 15,184 Loss Zanskari
622 EqCNV622 chr20 30493889 30504053 10,165 Gain Zanskari
623 EqCNV623 chr20 30493889 30505175 11,287 Gain Spiti
624 EqCNV624 chr20 30493889 30506135 12,247 Gain Marwari
625 EqCNV625 chr20 30497103 30504872 7,770 Gain Manipuri
626 EqCNV626 chr20 30497103 30513136 16,034 Gain Manipuri
627 EqCNV627 chr20 30497103 30507746 10,644 Gain Kathiawari
628 EqCNV628 chr20 30498211 30523455 25,245 Gain Manipuri
629 EqCNV629 chr20 30498211 30519989 21,779 Gain Zanskari
63 EqCNV63 chr1 156436146 156874227 438,082 Loss Spiti
630 EqCNV630 chr20 30498211 30505175 6,965 Gain Bhutia
631 EqCNV631 chr20 30498211 30523455 25,245 Gain Spiti
632 EqCNV632 chr20 30498211 30521239 23,029 Gain Spiti
633 EqCNV633 chr20 30498211 30507746 9,536 Gain Kathiawari
634 EqCNV634 chr20 30500694 30507746 7,053 Gain Bhutia
635 EqCNV635 chr20 30504053 30507746 3,694 Loss Zanskari
636 EqCNV636 chr20 30504635 30507746 3,112 Loss Kathiawari
637 EqCNV637 chr20 30505175 30515401 10,227 Gain Manipuri
638 EqCNV638 chr20 30509135 30524996 15,862 Gain Bhutia
639 EqCNV639 chr20 30596768 30674896 78,129 Loss Manipuri
64 EqCNV64 chr1 156436146 156634671 198,526 Loss Kathiawari
640 EqCNV640 chr20 30598562 30674896 76,335 Loss Zanskari
641 EqCNV641 chr20 30598562 30674896 76,335 Loss Bhutia
642 EqCNV642 chr20 30598562 30674896 76,335 Loss Bhutia
643 EqCNV643 chr20 30598562 30674896 76,335 Loss Marwari
644 EqCNV644 chr20 30598562 30674896 76,335 Loss Marwari
645 EqCNV645 chr20 30599137 30674896 75,760 Loss Bhutia
646 EqCNV646 chr20 30612208 30641603 29,396 Loss Bhutia
647 EqCNV647 chr20 30612208 30641603 29,396 Loss Bhutia
648 EqCNV648 chr20 30612208 30641603 29,396 Loss Bhutia
649 EqCNV649 chr20 30612208 30644854 32,647 Loss Spiti
65 EqCNV65 chr1 156436146 156874227 438,082 Loss Kathiawari
650 EqCNV650 chr20 30612208 30641603 29,396 Loss Kathiawari
651 EqCNV651 chr20 30622615 30688857 66,243 Gain Zanskari
652 EqCNV652 chr20 30622615 30687892 65,278 Gain Zanskari
653 EqCNV653 chr20 30622615 30652965 30,351 Gain Bhutia
654 EqCNV654 chr20 30622615 30687892 65,278 Gain Bhutia
655 EqCNV655 chr20 30622615 30659249 36,635 Gain Kathiawari
656 EqCNV656 chr20 30622615 30654239 31,625 Gain Marwari
657 EqCNV657 chr20 30622615 30689008 66,394 Gain Marwari
658 EqCNV658 chr20 30624048 30687892 63,845 Gain Manipuri
659 EqCNV659 chr20 30624048 30687892 63,845 Gain Spiti
66 EqCNV66 chr1 156436146 156874227 438,082 Loss Kathiawari
660 EqCNV660 chr20 30625826 30645526 19,701 Gain Zanskari
661 EqCNV661 chr20 30626851 30688857 62,007 Gain Spiti
662 EqCNV662 chr20 30665493 30688857 23,365 Gain Zanskari
663 EqCNV663 chr20 30665493 30688857 23,365 Gain Bhutia
664 EqCNV664 chr20 30665493 30687780 22,288 Gain Marwari
665 EqCNV665 chr20 30669293 30687780 18,488 Gain Bhutia
666 EqCNV666 chr20 30670049 30689008 18,960 Gain Zanskari
667 EqCNV667 chr20 30670454 30687892 17,439 Gain Kathiawari
668 EqCNV668 chr20 30742759 30842135 99,377 Gain Bhutia
669 EqCNV669 chr20 30745797 30793033 47,237 Gain Bhutia
67 EqCNV67 chr1 156438335 156874227 435,893 Loss Manipuri
670 EqCNV670 chr20 30853546 31037863 184,318 Gain Zanskari
671 EqCNV671 chr20 30853546 31048896 195,351 Gain Bhutia
672 EqCNV672 chr20 30859773 31044335 184,563 Gain Bhutia
673 EqCNV673 chr20 30859773 31034424 174,652 Gain Spiti
674 EqCNV674 chr20 30864513 31013680 149,168 Gain Spiti
675 EqCNV675 chr20 30878047 30952199 74,153 Gain Manipuri
676 EqCNV676 chr20 30952199 31027706 75,508 Gain Manipuri
677 EqCNV677 chr20 30971769 30985441 13,673 Gain Kathiawari
678 EqCNV678 chr20 30993629 31044335 50,707 Gain Zanskari
679 EqCNV679 chr20 30997453 31048896 51,444 Gain Manipuri
68 EqCNV68 chr1 156445018 156874227 429,210 Loss Marwari
680 EqCNV680 chr20 31169027 31279374 110,348 Loss Kathiawari
681 EqCNV681 chr20 31169027 31279374 110,348 Loss Marwari
682 EqCNV682 chr20 31955301 31980190 24,890 Loss Bhutia
683 EqCNV683 chr20 31955301 31980190 24,890 Loss Spiti
684 EqCNV684 chr20 31955418 31980190 24,773 Loss Bhutia
685 EqCNV685 chr20 31955534 31980190 24,657 Loss Bhutia
686 EqCNV686 chr20 31983165 32003713 20,549 Loss Bhutia
687 EqCNV687 chr20 32073836 32096564 22,729 Loss Bhutia
688 EqCNV688 chr20 32113332 32221750 108,419 Loss Bhutia
689 EqCNV689 chr20 32113332 32261255 147,924 Loss Marwari
69 EqCNV69 chr1 156703194 156874227 171,034 Loss Kathiawari
690 EqCNV690 chr20 32114208 32223466 109,259 Loss Manipuri
691 EqCNV691 chr20 32167556 32344527 176,972 Gain Marwari
692 EqCNV692 chr20 32170902 32376307 205,406 Gain Spiti
693 EqCNV693 chr20 32179165 32183704 4,540 Gain Bhutia
694 EqCNV694 chr20 32190928 32200126 9,199 Gain Zanskari
695 EqCNV695 chr20 32209169 32376307 167,139 Gain Zanskari
696 EqCNV696 chr20 32209169 32363346 154,178 Gain Bhutia
697 EqCNV697 chr20 32228668 32366540 137,873 Loss Manipuri
698 EqCNV698 chr20 32261255 32455196 193,942 Gain Bhutia
699 EqCNV699 chr20 32309262 32366540 57,279 Gain Bhutia
7 EqCNV7 chr1 114045817 114211825 166,009 Gain Zanskari
70 EqCNV70 chr1 158382396 158396609 14,214 Loss Bhutia
700 EqCNV700 chr20 32398026 32455196 57,171 Gain Bhutia
701 EqCNV701 chr20 32403982 32455196 51,215 Gain Zanskari
702 EqCNV702 chr20 32429834 32455196 25,363 Gain Zanskari
703 EqCNV703 chr20 32429834 32447008 17,175 Gain Kathiawari
704 EqCNV704 chr20 32431212 32455196 23,985 Gain Manipuri
705 EqCNV705 chr20 32435099 32477946 42,848 Loss Bhutia
706 EqCNV706 chr20 32436185 32494985 58,801 Loss Spiti
707 EqCNV707 chr20 32436185 32477946 41,762 Loss Kathiawari
708 EqCNV708 chr20 32467293 32582288 114,996 Loss Manipuri
709 EqCNV709 chr20 32467872 32582288 114,417 Loss Zanskari
71 EqCNV71 chr1 158382396 158396609 14,214 Loss Kathiawari
710 EqCNV710 chr20 32504521 32582288 77,768 Loss Kathiawari
711 EqCNV711 chr20 32692974 32768979 76,006 Loss Zanskari
712 EqCNV712 chr20 32934702 33136106 201,405 Loss Bhutia
713 EqCNV713 chr20 32939636 33134316 194,681 Loss Zanskari
714 EqCNV714 chr20 33030516 33136106 105,591 Loss Bhutia
715 EqCNV715 chr20 33074812 33133957 59,146 Loss Manipuri
716 EqCNV716 chr20 33074812 33134316 59,505 Loss Marwari
717 EqCNV717 chr20 33207278 33213673 6,396 Loss Manipuri
718 EqCNV718 chr20 33207278 33213673 6,396 Loss Bhutia
719 EqCNV719 chr20 33207278 33213673 6,396 Loss Bhutia
72 EqCNV72 chr1 158382396 158396609 14,214 Loss Marwari
720 EqCNV720 chr20 33207278 33213673 6,396 Loss Spiti
721 EqCNV721 chr20 35790624 35794992 4,369 Loss Kathiawari
722 EqCNV722 chr20 39568343 39575896 7,554 Loss Marwari
723 EqCNV723 chr20 54051262 54097093 45,832 Gain Zanskari
724 EqCNV724 chr20 62497347 62502051 4,705 Loss Bhutia
725 EqCNV725 chr21 899698 1075679 175,982 Gain Manipuri
726 EqCNV726 chr21 979543 1363717 384,175 Gain Zanskari
727 EqCNV727 chr21 986389 1254830 268,442 Gain Bhutia
728 EqCNV728 chr21 1063450 1254830 191,381 Gain Bhutia
729 EqCNV729 chr21 1063450 1350240 286,791 Gain Bhutia
73 EqCNV73 chr1 158394179 158402468 8,290 Loss Kathiawari
730 EqCNV730 chr21 1125373 1254830 129,458 Gain Bhutia
731 EqCNV731 chr21 19126256 19294846 168,591 Gain Kathiawari
732 EqCNV732 chr21 47617916 47879535 261,620 Gain Zanskari
733 EqCNV733 chr22 24124856 24237276 112,421 Gain Zanskari
734 EqCNV734 chr22 24124856 24237276 112,421 Gain Kathiawari
735 EqCNV735 chr22 24153862 24237276 83,415 Gain Spiti
736 EqCNV736 chr22 24178183 24257007 78,825 Gain Bhutia
737 EqCNV737 chr22 25175554 25253086 77,533 Gain Bhutia
738 EqCNV738 chr22 25175554 25240765 65,212 Gain Spiti
739 EqCNV739 chr22 25175554 25253086 77,533 Gain Marwari
74 EqCNV74 chr1 158394179 158402468 8,290 Loss Marwari
740 EqCNV740 chr22 25187112 25257945 70,834 Gain Manipuri
741 EqCNV741 chr22 25191177 25257945 66,769 Gain Marwari
742 EqCNV742 chr22 25198709 25240765 42,057 Gain Manipuri
743 EqCNV743 chr22 36433601 36523353 89,753 Gain Manipuri
744 EqCNV744 chr22 36433601 36509303 75,703 Gain Zanskari
745 EqCNV745 chr22 36433601 36523353 89,753 Gain Bhutia
746 EqCNV746 chr22 36435209 36523353 88,145 Gain Marwari
747 EqCNV747 chr22 36450894 36523353 72,460 Gain Manipuri
748 EqCNV748 chr22 36492956 36523353 30,398 Gain Spiti
749 EqCNV749 chr22 36492956 36523353 30,398 Gain Spiti
75 EqCNV75 chr1 158768332 158844204 75,873 Gain Bhutia
750 EqCNV750 chr23 5772881 5796042 23,162 Gain Bhutia
751 EqCNV751 chr23 5839733 6184098 344,366 Gain Bhutia
752 EqCNV752 chr23 6038267 6184098 145,832 Gain Zanskari
753 EqCNV753 chr23 6038267 6059662 21,396 Gain Bhutia
754 EqCNV754 chr23 6059662 6184098 124,437 Gain Bhutia
755 EqCNV755 chr23 7558502 7777659 219,158 Gain Zanskari
756 EqCNV756 chr23 7569314 7752913 183,600 Gain Bhutia
757 EqCNV757 chr23 7591641 7717332 125,692 Gain Spiti
758 EqCNV758 chr23 7641453 7718548 77,096 Gain Zanskari
759 EqCNV759 chr23 7864176 8050767 186,592 Gain Kathiawari
76 EqCNV76 chr1 158768332 158838394 70,063 Gain Kathiawari
760 EqCNV760 chr23 7886676 7971178 84,503 Gain Manipuri
761 EqCNV761 chr23 7927506 8018868 91,363 Gain Manipuri
762 EqCNV762 chr23 8095010 8219620 124,611 Gain Bhutia
763 EqCNV763 chr23 8730819 8740520 9,702 Gain Manipuri
764 EqCNV764 chr23 9464999 10560133 1,095,135 Gain Zanskari
765 EqCNV765 chr23 9488817 10560133 1,071,317 Gain Bhutia
766 EqCNV766 chr23 31214615 31666495 451,881 Gain Marwari
767 EqCNV767 chr23 40314443 40363237 48,795 Gain Kathiawari
768 EqCNV768 chr23 40326093 40354129 28,037 Gain Bhutia
769 EqCNV769 chr23 40328931 40363024 34,094 Gain Zanskari
77 EqCNV77 chr1 158768332 158867960 99,629 Gain Kathiawari
770 EqCNV770 chr23 40824626 40867307 42,682 Gain Manipuri
771 EqCNV771 chr23 50610805 50761418 150,614 Gain Spiti
772 EqCNV772 chr23 50642961 50761418 118,458 Gain Zanskari
773 EqCNV773 chr23 50642961 50744205 101,245 Gain Bhutia
774 EqCNV774 chr23 50653955 50702785 48,831 Gain Zanskari
775 EqCNV775 chr23 50653955 50761418 107,464 Gain Spiti
776 EqCNV776 chr23 50668515 50761418 92,904 Gain Bhutia
777 EqCNV777 chr24 38348053 38397446 49,394 Gain Bhutia
778 EqCNV778 chr24 38348053 38397446 49,394 Gain Spiti
779 EqCNV779 chr25 3624127 3756952 132,826 Gain Manipuri
78 EqCNV78 chr1 158790422 160176963 1,386,542 Gain Bhutia
780 EqCNV780 chr25 3624127 3776609 152,483 Gain Manipuri
781 EqCNV781 chr25 3676466 3756952 80,487 Gain Kathiawari
782 EqCNV782 chr25 3721607 3776609 55,003 Gain Bhutia
783 EqCNV783 chr25 5500491 5752410 251,920 Gain Manipuri
784 EqCNV784 chr25 17688374 17717561 29,188 Gain Zanskari
785 EqCNV785 chr25 17959355 18045518 86,164 Gain Bhutia
786 EqCNV786 chr25 26331156 26952286 621,131 Loss Kathiawari
787 EqCNV787 chr25 26331156 26952286 621,131 Loss Kathiawari
788 EqCNV788 chr25 26344388 26952286 607,899 Loss Zanskari
789 EqCNV789 chr25 26357942 26952286 594,345 Loss Manipuri
79 EqCNV79 chr1 158867802 159675672 807,871 Gain Bhutia
790 EqCNV790 chr25 26357942 26952286 594,345 Loss Spiti
791 EqCNV791 chr25 26357942 26952286 594,345 Loss Spiti
792 EqCNV792 chr25 26357942 26952286 594,345 Loss Kathiawari
793 EqCNV793 chr25 26357942 26964006 606,065 Loss Kathiawari
794 EqCNV794 chr25 26361000 26952286 591,287 Loss Manipuri
795 EqCNV795 chr25 26560358 26873375 313,018 Loss Spiti
796 EqCNV796 chr25 26560358 26873375 313,018 Loss Marwari
797 EqCNV797 chr25 26576692 26873375 296,684 Loss Zanskari
798 EqCNV798 chr25 35479455 35497470 18,016 Gain Zanskari
799 EqCNV799 chr26 1707889 1848636 140,748 Gain Manipuri
8 EqCNV8 chr1 114064605 114253762 189,158 Gain Bhutia
80 EqCNV80 chr1 158939510 159071578 132,069 Gain Bhutia
800 EqCNV800 chr26 2688009 2772194 84,186 Gain Zanskari
801 EqCNV801 chr26 6718775 6736431 17,657 Gain Zanskari
802 EqCNV802 chr26 6718775 6736431 17,657 Gain Bhutia
803 EqCNV803 chr26 6718775 6736431 17,657 Gain Spiti
804 EqCNV804 chr26 6718775 6736431 17,657 Gain Kathiawari
805 EqCNV805 chr26 18784598 19052616 268,019 Loss Zanskari
806 EqCNV806 chr26 18785673 19052616 266,944 Loss Spiti
807 EqCNV807 chr26 20522392 21048444 526,053 Gain Zanskari
808 EqCNV808 chr26 37159384 37218822 59,439 Gain Zanskari
809 EqCNV809 chr26 40046732 40079253 32,522 Gain Bhutia
81 EqCNV81 chr1 158939510 159245511 306,002 Gain Spiti
810 EqCNV810 chr27 141408 358905 217,498 Gain Bhutia
811 EqCNV811 chr27 175835 287218 111,384 Gain Manipuri
812 EqCNV812 chr27 175835 301765 125,931 Gain Zanskari
813 EqCNV813 chr27 175835 301765 125,931 Gain Spiti
814 EqCNV814 chr27 175835 358905 183,071 Gain Spiti
815 EqCNV815 chr27 178193 301765 123,573 Gain Spiti
816 EqCNV816 chr27 179097 301765 122,669 Gain Manipuri
817 EqCNV817 chr27 179097 301765 122,669 Gain Zanskari
818 EqCNV818 chr27 194244 395400 201,157 Gain Marwari
819 EqCNV819 chr27 204675 301765 97,091 Loss Zanskari
82 EqCNV82 chr1 158939510 159942400 1,002,891 Gain Kathiawari
820 EqCNV820 chr27 204675 301765 97,091 Gain Marwari
821 EqCNV821 chr27 374710 598104 223,395 Gain Manipuri
822 EqCNV822 chr27 406253 571238 164,986 Gain Manipuri
823 EqCNV823 chr27 15073009 15196408 123,400 Gain Bhutia
824 EqCNV824 chr27 33274091 33283293 9,203 Gain Zanskari
825 EqCNV825 chr27 33274091 33283293 9,203 Gain Spiti
826 EqCNV826 chr27 33274091 33283293 9,203 Gain Kathiawari
827 EqCNV827 chr27 33586430 33676068 89,639 Gain Manipuri
828 EqCNV828 chr27 33650892 33695955 45,064 Gain Manipuri
829 EqCNV829 chr29 6371 483458 477,088 Gain Manipuri
83 EqCNV83 chr1 158942442 159242188 299,747 Gain Bhutia
830 EqCNV830 chr29 6371 782977 776,607 Gain Manipuri
831 EqCNV831 chr29 6371 771152 764,782 Gain Manipuri
832 EqCNV832 chr29 6371 703443 697,073 Gain Zanskari
833 EqCNV833 chr29 6371 782977 776,607 Gain Bhutia
834 EqCNV834 chr29 6371 601655 595,285 Gain Bhutia
835 EqCNV835 chr29 6371 126611 120,241 Gain Bhutia
836 EqCNV836 chr29 6371 703443 697,073 Gain Spiti
837 EqCNV837 chr29 122135 782977 660,843 Gain Bhutia
838 EqCNV838 chr29 257136 766212 509,077 Gain Bhutia
839 EqCNV839 chr29 307567 617634 310,068 Gain Zanskari
84 EqCNV84 chr1 158944113 159076724 132,612 Gain Manipuri
840 EqCNV840 chr29 328224 653332 325,109 Gain Bhutia
841 EqCNV841 chr29 352967 734591 381,625 Gain Bhutia
842 EqCNV842 chr29 352967 653332 300,366 Gain Kathiawari
843 EqCNV843 chr29 352967 796222 443,256 Gain Kathiawari
844 EqCNV844 chr29 359268 721364 362,097 Gain Bhutia
845 EqCNV845 chr29 468749 840722 371,974 Gain Zanskari
846 EqCNV846 chr29 538409 686918 148,510 Gain Spiti
847 EqCNV847 chr29 1053473 1245396 191,924 Gain Manipuri
848 EqCNV848 chr29 1053473 1188908 135,436 Gain Bhutia
849 EqCNV849 chr29 1088594 1245396 156,803 Gain Zanskari
85 EqCNV85 chr1 158945694 159071578 125,885 Gain Marwari
850 EqCNV850 chr29 1088594 1250159 161,566 Gain Bhutia
851 EqCNV851 chr29 26375868 26461874 86,007 Gain Bhutia
852 EqCNV852 chr29 26375868 26428254 52,387 Gain Kathiawari
853 EqCNV853 chr29 26375868 26461874 86,007 Gain Marwari
854 EqCNV854 chr29 26375868 26453492 77,625 Gain Marwari
855 EqCNV855 chr29 26377468 26461874 84,407 Gain Zanskari
856 EqCNV856 chr29 26384101 26461874 77,774 Gain Manipuri
857 EqCNV857 chr29 26384101 26461874 77,774 Gain Zanskari
858 EqCNV858 chr29 26384101 26453492 69,392 Gain Bhutia
859 EqCNV859 chr29 26390682 26461874 71,193 Gain Manipuri
86 EqCNV86 chr1 158946931 159036082 89,152 Gain Spiti
860 EqCNV860 chr29 28597251 28821693 224,443 Loss Manipuri
861 EqCNV861 chr29 28597251 28821693 224,443 Loss Zanskari
862 EqCNV862 chr29 28597251 28821693 224,443 Loss Zanskari
863 EqCNV863 chr29 28597251 28821693 224,443 Loss Bhutia
864 EqCNV864 chr29 28597251 28705515 108,265 Loss Bhutia
865 EqCNV865 chr29 28597251 28821693 224,443 Loss Spiti
866 EqCNV866 chr30 1846348 2310559 464,212 Gain Spiti
867 EqCNV867 chr30 5482626 5835349 352,724 Loss Zanskari
868 EqCNV868 chr30 5482626 5835349 352,724 Loss Bhutia
869 EqCNV869 chr30 5482626 5835349 352,724 Loss Spiti
87 EqCNV87 chr1 158949292 159942400 993,109 Gain Zanskari
870 EqCNV870 chr30 5482626 5835349 352,724 Loss Kathiawari
871 EqCNV871 chr30 5494644 5626987 132,344 Loss Kathiawari
872 EqCNV872 chr30 5500847 5626987 126,141 Loss Kathiawari
873 EqCNV873 chr30 24754690 24849796 95,107 Gain Spiti
874 EqCNV874 chr30 24754690 24849796 95,107 Gain Kathiawari
875 EqCNV875 chr30 24767066 24813157 46,092 Gain Manipuri
876 EqCNV876 chr30 24767066 24858066 91,001 Gain Zanskari
877 EqCNV877 chr30 24767066 24849796 82,731 Gain Zanskari
878 EqCNV878 chr30 24767066 24849796 82,731 Gain Bhutia
879 EqCNV879 chr30 24767066 24854698 87,633 Gain Spiti
88 EqCNV88 chr1 158957046 159106133 149,088 Gain Zanskari
880 EqCNV880 chr30 24767066 24849796 82,731 Gain Spiti
881 EqCNV881 chr30 24775828 24813157 37,330 Gain Bhutia
882 EqCNV882 chr30 24775828 24803972 28,145 Gain Bhutia
883 EqCNV883 chr30 24791676 24813157 21,482 Gain Bhutia
89 EqCNV89 chr1 158964335 158978953 14,619 Gain Zanskari
9 EqCNV9 chr1 114066589 114211825 145,237 Gain Bhutia
90 EqCNV90 chr1 158966403 159036082 69,680 Gain Zanskari
91 EqCNV91 chr1 158970216 159036082 65,867 Gain Bhutia
92 EqCNV92 chr1 158974408 159062479 88,072 Gain Bhutia
93 EqCNV93 chr1 158974408 159062479 88,072 Gain Spiti
94 EqCNV94 chr1 158987745 159213108 225,364 Gain Kathiawari
95 EqCNV95 chr1 159022526 159213108 190,583 Gain Kathiawari
96 EqCNV96 chr1 159057430 159491318 433,889 Gain Manipuri
97 EqCNV97 chr1 159091150 159247122 155,973 Gain Zanskari
98 EqCNV98 chr1 159091150 159242188 151,039 Gain Bhutia
99 EqCNV99 chr1 159100596 159677930 577,335 Gain Kathiawari
id CNV_id Chromosome Start End Length Type Breed CNVR

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ICAR-National Research Centre on Equines
Hisar -125001		 not coming
ICAR-Indian Agricultural Statistics Research Institute
New Delhi - 110012
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