ssr_primers

ssr_primer

Primer Details for TRINITY_DN12748_c2_g1_i6
(AG)6: Primer 1 details
Primer Characteristics	Forward Primer	Reverse Primer	Product Details
Sequence	ACGACCATGAGGAGGAGGAT	ATCTCTTGCAGCCTCCAACC	Start: 931
Tm	59.737	60.035	End: 1077
Size	20	20	147
Primer 2 details
Sequence	TCAGACGACCATGAGGAGGA	ATCTCTTGCAGCCTCCAACC	Start: 927
Tm	59.668	60.035	End: 1077
Size	20	20	151
Primer 3 details
Sequence	GACGACCATGAGGAGGAGGA	ATCTCTTGCAGCCTCCAACC	Start: 930
Tm	60.396	60.035	End: 1077
Size	20	20	148
Primer 4 details
Sequence	AGACGACCATGAGGAGGAGG	ATCTCTTGCAGCCTCCAACC	Start: 929
Tm	60.396	60.035	End: 1077
Size	20	20	149
Primer 5 details
Sequence	ACGACCATGAGGAGGAGGAT	GCAGCCTCCAACCACCAATA	Start: 931
Tm	59.737	60.323	End: 1070
Size	20	20	140
(ATC)8aaactcatcaagctcatcaacaacctctaat(TTC)14: Primer 1 details
Primer Characteristics	Forward Primer	Reverse Primer	Product Details
Sequence	ACGACCATGAGGAGGAGGAT	ATCTCTTGCAGCCTCCAACC	Start: 931
Tm	59.737	60.035	End: 1077
Size	20	20	147
Primer 2 details
Sequence	TCAGACGACCATGAGGAGGA	ATCTCTTGCAGCCTCCAACC	Start: 927
Tm	59.668	60.035	End: 1077
Size	20	20	151
Primer 3 details
Sequence	GACGACCATGAGGAGGAGGA	ATCTCTTGCAGCCTCCAACC	Start: 930
Tm	60.396	60.035	End: 1077
Size	20	20	148
Primer 4 details
Sequence	AGACGACCATGAGGAGGAGG	ATCTCTTGCAGCCTCCAACC	Start: 929
Tm	60.396	60.035	End: 1077
Size	20	20	149
Primer 5 details
Sequence	ACGACCATGAGGAGGAGGAT	GCAGCCTCCAACCACCAATA	Start: 931
Tm	59.737	60.323	End: 1070
Size	20	20	140
(A)10: Primer 1 details
Primer Characteristics	Forward Primer	Reverse Primer	Product Details
Sequence	ACGACCATGAGGAGGAGGAT	ATCTCTTGCAGCCTCCAACC	Start: 931
Tm	59.737	60.035	End: 1077
Size	20	20	147
Primer 2 details
Sequence	TCAGACGACCATGAGGAGGA	ATCTCTTGCAGCCTCCAACC	Start: 927
Tm	59.668	60.035	End: 1077
Size	20	20	151
Primer 3 details
Sequence	GACGACCATGAGGAGGAGGA	ATCTCTTGCAGCCTCCAACC	Start: 930
Tm	60.396	60.035	End: 1077
Size	20	20	148
Primer 4 details
Sequence	AGACGACCATGAGGAGGAGG	ATCTCTTGCAGCCTCCAACC	Start: 929
Tm	60.396	60.035	End: 1077
Size	20	20	149
Primer 5 details
Sequence	ACGACCATGAGGAGGAGGAT	GCAGCCTCCAACCACCAATA	Start: 931
Tm	59.737	60.323	End: 1070
Size	20	20	140
(GAA)5: Primer 1 details
Primer Characteristics	Forward Primer	Reverse Primer	Product Details
Sequence	ACGACCATGAGGAGGAGGAT	ATCTCTTGCAGCCTCCAACC	Start: 931
Tm	59.737	60.035	End: 1077
Size	20	20	147
Primer 2 details
Sequence	TCAGACGACCATGAGGAGGA	ATCTCTTGCAGCCTCCAACC	Start: 927
Tm	59.668	60.035	End: 1077
Size	20	20	151
Primer 3 details
Sequence	GACGACCATGAGGAGGAGGA	ATCTCTTGCAGCCTCCAACC	Start: 930
Tm	60.396	60.035	End: 1077
Size	20	20	148
Primer 4 details
Sequence	AGACGACCATGAGGAGGAGG	ATCTCTTGCAGCCTCCAACC	Start: 929
Tm	60.396	60.035	End: 1077
Size	20	20	149
Primer 5 details
Sequence	ACGACCATGAGGAGGAGGAT	GCAGCCTCCAACCACCAATA	Start: 931
Tm	59.737	60.323	End: 1070
Size	20	20	140
(A)11gaacaaaaattcc(TCTT)10tttggtttgaaattgtttccatgtgtatttgtcagaagggggaggcaaatgagttttggttttag(T)11attatttataattattatttcaatttttcttagcttt(TTA)5: Primer 1 details
Primer Characteristics	Forward Primer	Reverse Primer	Product Details
Sequence	ACGACCATGAGGAGGAGGAT	ATCTCTTGCAGCCTCCAACC	Start: 931
Tm	59.737	60.035	End: 1077
Size	20	20	147
Primer 2 details
Sequence	TCAGACGACCATGAGGAGGA	ATCTCTTGCAGCCTCCAACC	Start: 927
Tm	59.668	60.035	End: 1077
Size	20	20	151
Primer 3 details
Sequence	GACGACCATGAGGAGGAGGA	ATCTCTTGCAGCCTCCAACC	Start: 930
Tm	60.396	60.035	End: 1077
Size	20	20	148
Primer 4 details
Sequence	AGACGACCATGAGGAGGAGG	ATCTCTTGCAGCCTCCAACC	Start: 929
Tm	60.396	60.035	End: 1077
Size	20	20	149
Primer 5 details
Sequence	ACGACCATGAGGAGGAGGAT	GCAGCCTCCAACCACCAATA	Start: 931
Tm	59.737	60.323	End: 1070
Size	20	20	140

CsExSLDb: Transcriptome based Cucumis sativus Extended Shelf Life Database

Primer Details for TRINITY_DN12748_c2_g1_i6

ICAR Data Use Licence