ssr_primers

ssr_primer

Primer Details for TRINITY_DN11859_c3_g2_i3
(T)17: Primer 1 details
Primer Characteristics	Forward Primer	Reverse Primer	Product Details
Sequence	GGGAAATCACCACGGTGGAT	TCTCGGAGTTGGACCAAACG	Start: 4498
Tm	60.034	59.967	End: 4738
Size	20	20	241
Primer 2 details
Sequence	CGTTTGGTCCAACTCCGAGA	CAGTGGCAGCTCTTCCTCAA	Start: 4719
Tm	59.967	59.964	End: 4962
Size	20	20	244
Primer 3 details
Sequence	CGTTTGGTCCAACTCCGAGA	GTGGCAGCTCTTCCTCAAGT	Start: 4719
Tm	59.967	59.964	End: 4960
Size	20	20	242
Primer 4 details
Sequence	CGTTTGGTCCAACTCCGAGA	CAGTAGCAGTGGCAGCTCTT	Start: 4719
Tm	59.967	60.037	End: 4968
Size	20	20	250
Primer 5 details
Sequence	TAAAACCGGCTTGGCGTAGT	TTCGCTTGAAGCCTGCTGTA	Start: 3611
Tm	59.965	59.965	End: 3768
Size	20	20	158
(T)17: Primer 1 details
Primer Characteristics	Forward Primer	Reverse Primer	Product Details
Sequence	GGGAAATCACCACGGTGGAT	TCTCGGAGTTGGACCAAACG	Start: 4498
Tm	60.034	59.967	End: 4738
Size	20	20	241
Primer 2 details
Sequence	CGTTTGGTCCAACTCCGAGA	CAGTGGCAGCTCTTCCTCAA	Start: 4719
Tm	59.967	59.964	End: 4962
Size	20	20	244
Primer 3 details
Sequence	CGTTTGGTCCAACTCCGAGA	GTGGCAGCTCTTCCTCAAGT	Start: 4719
Tm	59.967	59.964	End: 4960
Size	20	20	242
Primer 4 details
Sequence	CGTTTGGTCCAACTCCGAGA	CAGTAGCAGTGGCAGCTCTT	Start: 4719
Tm	59.967	60.037	End: 4968
Size	20	20	250
Primer 5 details
Sequence	TAAAACCGGCTTGGCGTAGT	TTCGCTTGAAGCCTGCTGTA	Start: 3611
Tm	59.965	59.965	End: 3768
Size	20	20	158
(CT)6: Primer 1 details
Primer Characteristics	Forward Primer	Reverse Primer	Product Details
Sequence	GGGAAATCACCACGGTGGAT	TCTCGGAGTTGGACCAAACG	Start: 4498
Tm	60.034	59.967	End: 4738
Size	20	20	241
Primer 2 details
Sequence	CGTTTGGTCCAACTCCGAGA	CAGTGGCAGCTCTTCCTCAA	Start: 4719
Tm	59.967	59.964	End: 4962
Size	20	20	244
Primer 3 details
Sequence	CGTTTGGTCCAACTCCGAGA	GTGGCAGCTCTTCCTCAAGT	Start: 4719
Tm	59.967	59.964	End: 4960
Size	20	20	242
Primer 4 details
Sequence	CGTTTGGTCCAACTCCGAGA	CAGTAGCAGTGGCAGCTCTT	Start: 4719
Tm	59.967	60.037	End: 4968
Size	20	20	250
Primer 5 details
Sequence	TAAAACCGGCTTGGCGTAGT	TTCGCTTGAAGCCTGCTGTA	Start: 3611
Tm	59.965	59.965	End: 3768
Size	20	20	158
(AC)9: Primer 1 details
Primer Characteristics	Forward Primer	Reverse Primer	Product Details
Sequence	GGGAAATCACCACGGTGGAT	TCTCGGAGTTGGACCAAACG	Start: 4498
Tm	60.034	59.967	End: 4738
Size	20	20	241
Primer 2 details
Sequence	CGTTTGGTCCAACTCCGAGA	CAGTGGCAGCTCTTCCTCAA	Start: 4719
Tm	59.967	59.964	End: 4962
Size	20	20	244
Primer 3 details
Sequence	CGTTTGGTCCAACTCCGAGA	GTGGCAGCTCTTCCTCAAGT	Start: 4719
Tm	59.967	59.964	End: 4960
Size	20	20	242
Primer 4 details
Sequence	CGTTTGGTCCAACTCCGAGA	CAGTAGCAGTGGCAGCTCTT	Start: 4719
Tm	59.967	60.037	End: 4968
Size	20	20	250
Primer 5 details
Sequence	TAAAACCGGCTTGGCGTAGT	TTCGCTTGAAGCCTGCTGTA	Start: 3611
Tm	59.965	59.965	End: 3768
Size	20	20	158
(T)10: Primer 1 details
Primer Characteristics	Forward Primer	Reverse Primer	Product Details
Sequence	GGGAAATCACCACGGTGGAT	TCTCGGAGTTGGACCAAACG	Start: 4498
Tm	60.034	59.967	End: 4738
Size	20	20	241
Primer 2 details
Sequence	CGTTTGGTCCAACTCCGAGA	CAGTGGCAGCTCTTCCTCAA	Start: 4719
Tm	59.967	59.964	End: 4962
Size	20	20	244
Primer 3 details
Sequence	CGTTTGGTCCAACTCCGAGA	GTGGCAGCTCTTCCTCAAGT	Start: 4719
Tm	59.967	59.964	End: 4960
Size	20	20	242
Primer 4 details
Sequence	CGTTTGGTCCAACTCCGAGA	CAGTAGCAGTGGCAGCTCTT	Start: 4719
Tm	59.967	60.037	End: 4968
Size	20	20	250
Primer 5 details
Sequence	TAAAACCGGCTTGGCGTAGT	TTCGCTTGAAGCCTGCTGTA	Start: 3611
Tm	59.965	59.965	End: 3768
Size	20	20	158
(T)18: Primer 1 details
Primer Characteristics	Forward Primer	Reverse Primer	Product Details
Sequence	GGGAAATCACCACGGTGGAT	TCTCGGAGTTGGACCAAACG	Start: 4498
Tm	60.034	59.967	End: 4738
Size	20	20	241
Primer 2 details
Sequence	CGTTTGGTCCAACTCCGAGA	CAGTGGCAGCTCTTCCTCAA	Start: 4719
Tm	59.967	59.964	End: 4962
Size	20	20	244
Primer 3 details
Sequence	CGTTTGGTCCAACTCCGAGA	GTGGCAGCTCTTCCTCAAGT	Start: 4719
Tm	59.967	59.964	End: 4960
Size	20	20	242
Primer 4 details
Sequence	CGTTTGGTCCAACTCCGAGA	CAGTAGCAGTGGCAGCTCTT	Start: 4719
Tm	59.967	60.037	End: 4968
Size	20	20	250
Primer 5 details
Sequence	TAAAACCGGCTTGGCGTAGT	TTCGCTTGAAGCCTGCTGTA	Start: 3611
Tm	59.965	59.965	End: 3768
Size	20	20	158
(TG)16: Primer 1 details
Primer Characteristics	Forward Primer	Reverse Primer	Product Details
Sequence	GGGAAATCACCACGGTGGAT	TCTCGGAGTTGGACCAAACG	Start: 4498
Tm	60.034	59.967	End: 4738
Size	20	20	241
Primer 2 details
Sequence	CGTTTGGTCCAACTCCGAGA	CAGTGGCAGCTCTTCCTCAA	Start: 4719
Tm	59.967	59.964	End: 4962
Size	20	20	244
Primer 3 details
Sequence	CGTTTGGTCCAACTCCGAGA	GTGGCAGCTCTTCCTCAAGT	Start: 4719
Tm	59.967	59.964	End: 4960
Size	20	20	242
Primer 4 details
Sequence	CGTTTGGTCCAACTCCGAGA	CAGTAGCAGTGGCAGCTCTT	Start: 4719
Tm	59.967	60.037	End: 4968
Size	20	20	250
Primer 5 details
Sequence	TAAAACCGGCTTGGCGTAGT	TTCGCTTGAAGCCTGCTGTA	Start: 3611
Tm	59.965	59.965	End: 3768
Size	20	20	158

CsExSLDb: Transcriptome based Cucumis sativus Extended Shelf Life Database

Primer Details for TRINITY_DN11859_c3_g2_i3

ICAR Data Use Licence