About BpSNPdb

Black pepper is an economically important spice crop. BpVarDB is a database for polymorphic variants (SNP/InDels) of black pepper extracted among 39 genotypes of black pepper found across India. This database could be utilized by black pepper research community in various studies such as identification of a genotype, genetic diversity, marker trait association, QTL mapping, candidate gene analysis etc. A sum of 1104770 SNPs and 122208 InDels were extracted from GBS libraries of 39 genotypes in comparison to black pepper reference genome provided by Hu et al., 2019.